Gene
RNA
| Item | Value |
|---|---|
| gene id | G1740127 |
| gene name | LOC106608858 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048585.1 |
| NCBI id | CM023239.2 |
| chromosome length | 64935962 |
| location | 42859846 ~ 42860278 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1992813 | True | 433 | lncRNA | 0.57 | 1 | 42859846 | 42860278 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500479 | LOC106608859 | coding | upstream | 25752 | 42821715 ~ 42834094 (+) |
| LOC110500477 | LOC106608861 | coding | upstream | 59298 | 42790604 ~ 42800548 (+) |
| LOC110500846 | nat8l | coding | upstream | 169567 | 42676945 ~ 42692054 (+) |
| c21h4orf48 | cssa07h4orf48 | coding | upstream | 198751 | 42655361 ~ 42661164 (+) |
| faah2b | LOC106608863 | coding | upstream | 218565 | 42633393 ~ 42641281 (+) |
| LOC110500480 | LOC106608857 | coding | downstream | 142408 | 43002686 ~ 43034963 (+) |
| gmpr2 | LOC106608854 | coding | downstream | 181488 | 43041766 ~ 43055080 (+) |
| LOC110500484 | LOC106608853 | coding | downstream | 198234 | 43058512 ~ 43062374 (+) |
| tinf2 | LOC106608852 | coding | downstream | 214007 | 43074285 ~ 43079143 (+) |
| efs | LOC106608851 | coding | downstream | 238459 | 43098737 ~ 43112481 (+) |
| G1740103 | NA | non-coding | upstream | 21086 | 42836144 ~ 42838760 (+) |
| G1740101 | NA | non-coding | upstream | 38771 | 42819086 ~ 42821075 (+) |
| G1740100 | NA | non-coding | upstream | 42002 | 42817437 ~ 42817844 (+) |
| G1740099 | NA | non-coding | upstream | 42483 | 42817164 ~ 42817363 (+) |
| G1740098 | NA | non-coding | upstream | 42707 | 42816883 ~ 42817139 (+) |
| G1740131 | NA | non-coding | downstream | 3417 | 42863695 ~ 42863924 (+) |
| G1740134 | NA | non-coding | downstream | 6440 | 42866718 ~ 42867152 (+) |
| G1740135 | NA | non-coding | downstream | 8955 | 42869233 ~ 42869452 (+) |
| G1740136 | NA | non-coding | downstream | 9346 | 42869624 ~ 42869832 (+) |
| G1740137 | NA | non-coding | downstream | 10466 | 42870744 ~ 42870944 (+) |
| G1739440 | vax2 | other | upstream | 357489 | 42501349 ~ 42502357 (+) |
| si:dkey-185m8.2 | LOC106608874 | other | upstream | 504519 | 42354556 ~ 42370239 (+) |
| cxcl8c | cxcl8c | other | upstream | 571346 | 42285056 ~ 42288500 (+) |
| G1739103 | NA | other | upstream | 961990 | 41888811 ~ 41897856 (+) |
| G1738119 | NA | other | upstream | 1830710 | 41024710 ~ 41029136 (+) |
| G1740312 | r1441 | other | downstream | 395375 | 43255653 ~ 43327738 (+) |
| LOC110500499 | ubil | other | downstream | 406936 | 43267057 ~ 43268143 (+) |
| G1740366 | LOC106608832 | other | downstream | 528911 | 43389189 ~ 43390299 (+) |
| G1740398 | NA | other | downstream | 586772 | 43447050 ~ 43451167 (+) |
| G1740412 | LOC106608825 | other | downstream | 609540 | 43469818 ~ 43470325 (+) |
