G1740209


Basic Information

Item Value
gene id G1740209
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42984551 ~ 42985006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1992921
tacttatttagcCAATTTTAGTTTTTTCTGTATGTTGGTGGGGCAAATTTATCTGTGTTAATGTTACTCCTTAATCACTATGATCAATTAAATAGTTTTTCTTGAGTGTAcctttaacagagctgagatatACTTTGAATTGCAAAGTGTATCAAAACAGGGGAAATCAGTTATTGGTGGCAAAGCAGAAAGATTGGCACGCTGTGATCCAAGaggagttcaaatcccaggtgaggacatgttgaataataattactgtacactcttagaaaaaaaggttctgaggttgtccccataggagaaccatttttggttccaggtagaagggttcttctacctggaaccaaaaaggatttgTCAAATGGTTATTCTATGGGTGTAACGAAtgtcgtcgggagaaggagaagaggaccaaggtgcagcgtggtaagtattgcGTTTAATAATGCGTTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1992921 True 456 lncRNA 0.38 1 42984551 42985006

Neighbor

gene id symbol gene type direction distance location
LOC110500479 LOC106608859 coding upstream 150457 42821715 ~ 42834094 (+)
LOC110500477 LOC106608861 coding upstream 184003 42790604 ~ 42800548 (+)
LOC110500846 nat8l coding upstream 294272 42676945 ~ 42692054 (+)
c21h4orf48 cssa07h4orf48 coding upstream 323456 42655361 ~ 42661164 (+)
faah2b LOC106608863 coding upstream 343270 42633393 ~ 42641281 (+)
LOC110500480 LOC106608857 coding downstream 17680 43002686 ~ 43034963 (+)
gmpr2 LOC106608854 coding downstream 56760 43041766 ~ 43055080 (+)
LOC110500484 LOC106608853 coding downstream 73506 43058512 ~ 43062374 (+)
tinf2 LOC106608852 coding downstream 89279 43074285 ~ 43079143 (+)
efs LOC106608851 coding downstream 113731 43098737 ~ 43112481 (+)
G1740206 NA non-coding upstream 2759 42981453 ~ 42981792 (+)
G1740162 NA non-coding upstream 68821 42915508 ~ 42915730 (+)
G1740161 NA non-coding upstream 70161 42914189 ~ 42914390 (+)
G1740142 NA non-coding upstream 101674 42882519 ~ 42882877 (+)
G1740139 LOC106608858 non-coding upstream 108915 42875415 ~ 42875636 (+)
G1740210 NA non-coding downstream 95 42985101 ~ 42985377 (+)
G1740211 NA non-coding downstream 2759 42987765 ~ 42988281 (+)
LOC110500494 LOC106608896 non-coding downstream 173682 43158688 ~ 43161693 (+)
G1740274 NA non-coding downstream 184257 43169263 ~ 43169540 (+)
G1740276 NA non-coding downstream 186370 43171376 ~ 43171589 (+)
G1739440 vax2 other upstream 482194 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 629224 42354556 ~ 42370239 (+)
cxcl8c cxcl8c other upstream 696051 42285056 ~ 42288500 (+)
G1739103 NA other upstream 1086695 41888811 ~ 41897856 (+)
G1738119 NA other upstream 1955415 41024710 ~ 41029136 (+)
G1740312 r1441 other downstream 270647 43255653 ~ 43327738 (+)
LOC110500499 ubil other downstream 282208 43267057 ~ 43268143 (+)
G1740366 LOC106608832 other downstream 404183 43389189 ~ 43390299 (+)
G1740398 NA other downstream 462044 43447050 ~ 43451167 (+)
G1740412 LOC106608825 other downstream 484812 43469818 ~ 43470325 (+)

Expression


Co-expression Network