G1740398


Basic Information

Item Value
gene id G1740398
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 43447050 ~ 43451167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1993150
TATTTGAAAAGAGGAAATACACAAGAAACAGTAGCAGTCATAAACCAGAGTCAACTAAATGCACAAAACTCTATTGAAGGTCCTTCATGGTGGTAAATGCTTAAAGATACTGTGTTGAATCAATGTTAATAATATATTGGATGTCAACACATGGCAGTGATATTATGTCCTTTAACTGGAGAAACAACACTTTGCCTGCCGTGTGGTTGAGATGTTTGCTGTTGATCACAAACAAAAGTTTTCCCACAGTAAACCACATATGTTGACAGATAACTTTTACATGAAATTGGTTGTATAAAACGTGGTAGTGTGAAGGAGGTTACTTTGGTTGAACTCCAGAGGAACGGTTTACTTTGTTCTTTAAACTGTGGCGCCTATACTGAAGCCTTCCCAGATAAGAGTTTGGCTGCTGTGGttgttctcctccttctcctccctgctCTAACACCattctttcctcctgtctccctcctcatcttggctctccctttccctccacgcgctcccttctcttcctcaccttttctttctctctccctctctttcttcctctttgtGTGTCACTCTCGCTCATCCTCGCTCCCTCCCCCTATACATAGATCTTGACACTAGCTTCCTTCACAtcgctccctctccccaccctccccccctccccctcacaccCAGACCttacccttccctcctccctcccctccagcgCCACTGCCTCCACAGCAGCCCCCTCCCAGGCCAGGGTGCTGTGTGGCGGGCAGGTTCTTGTAGATAGCCCTGGAGTATGGTATAAAGCAGAGCCCCAGTTGGAGGTGGCGGGCCAGGCGGCAGTAGGCGGCCAGAGCCAGGACCAGGAGGGGTGTGACCAGGAGGAAACCCACAACCAGGAGGGCCACACAGCCACCGTCATTCAGCAGGTCCGAGCAGTAGCGCGACGTCCCATGAGGGCGCACCGTAGAATGACAGAGGAACCCGAACACCACCATGGCGATGGCGGGGGTGAGGATGAGTCCGAACACCAGTCCGGCCAGGCAGGCGTTGATCCCAGCGATGACCAGGTTCTGGGCCGTCACCAGCACCGAGCACGCCCAGCAGTCCAGAGAGCCTCGGAGCTCCAGGGGAGCATCACTACCACCTCCCCCACTCTCAGCTGCAGAGTACGGGGGAGGCACCACCACGCCGGAGGGGGTCCCCACAGGAGCGCTGGAGGCCAGAGAGTTGGAGtgctggaggtggtggtggtttgggtggtggtggttgaggggAGAGAGCTCCTCGGAGAGCTCCAGAGCCTGGTGGTGGGCCCCCTTCTCCAGTGTACCGATTACACTCAT
>TU1993149
AAACTCCACCCTAATTTTCAGCTAAACTATTCCAAACTTGTGGTGGATGGTGGAGGTTTAGTTAGTCAGCATGCTGTATAACATATTATTACTGGTTTCTTATCTAGTCTGATAGTCCTGAGTACCTCTGAAAGGGTAAATTGTTATGACTGTTCTGGCAAACACCACTCACACTGACGCACACACgttgacacacacactgacacagatgaATTATGAATGTGAAATTGAAATGACACATAGGAATTTTGGAAGATGAATGTAAGTATTGCACAAATGCCCTTTACTctgtgtacacacatacacacacacacacccttcgtACCGTAGAATGACAGAGGAACCCGAACACCACCATGGCGATGGCGGGGGTGAGGATGAGTCCGAACACCAGTCCGGCCAGGCAGGCGTTGATCCCAGCGATGACCAGGTTCTGGGCCGTCACCAGCACCGAGCACGCCCAGCAGTCCAGAGAGCCTCGGAGCTCCAGGGGAGCATCACTACCACCTCCCCCACTCTCAGCTGCAGAGTACGGGGGAGGCACCACCACGCCGGAGGGGGTCCCCACAGGAGCGCTGGAGGCCAGAGAGTTGGAGtgctggaggtggtggtggtttgggtggtggtggttgaggggAGAGAGCTCCTCGGAGAGCTCCAGAGCCTGGTGGTGGGCCCCCTTCTCCAGTGTACCGATTACACTCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1993150 False 1325 TUCP 0.55 2 43447050 43451167
TU1993149 True 706 TUCP 0.53 2 43450422 43451167

Neighbor

gene id symbol gene type direction distance location
LOC110500847 NA coding upstream 38008 43405498 ~ 43409042 (+)
LOC118942788 NA coding upstream 42303 43397554 ~ 43404747 (+)
LOC110500510 ccnb1ip1 coding upstream 61972 43382881 ~ 43385078 (+)
oxa1l LOC106608836 coding upstream 92613 43346414 ~ 43354437 (+)
LOC110500504 NA coding upstream 101271 43335680 ~ 43345779 (+)
LOC118942933 NA coding downstream 561686 44012853 ~ 44019901 (+)
LOC110500517 LOC106608821 coding downstream 588785 44039952 ~ 44050765 (+)
pop7 pop7 coding downstream 646770 44097937 ~ 44099926 (+)
LOC110500520 LOC106608811 coding downstream 674915 44126082 ~ 44154069 (+)
ufsp1 ufsp1 coding downstream 675507 44126674 ~ 44128053 (+)
G1740388 NA non-coding upstream 14889 43430283 ~ 43432161 (+)
G1740367 LOC106608832 non-coding upstream 60818 43385227 ~ 43386232 (+)
G1740345 NA non-coding upstream 75221 43344536 ~ 43371829 (+)
G1740340 NA non-coding upstream 113357 43333476 ~ 43333693 (+)
G1740411 NA non-coding downstream 11686 43462853 ~ 43463081 (+)
G1740408 NA non-coding downstream 13663 43464830 ~ 43466342 (+)
G1740415 LOC106608825 non-coding downstream 24696 43475863 ~ 43476299 (+)
G1740416 LOC106608825 non-coding downstream 25862 43477029 ~ 43477252 (+)
G1740414 NA non-coding downstream 26242 43477409 ~ 43477640 (+)
G1740366 LOC106608832 other upstream 56751 43389189 ~ 43390299 (+)
G1740312 r1441 other upstream 119312 43255653 ~ 43327738 (+)
LOC110500499 ubil other upstream 178907 43267057 ~ 43268143 (+)
G1739440 vax2 other upstream 944693 42501349 ~ 42502357 (+)
si:dkey-185m8.2 LOC106608874 other upstream 1091723 42354556 ~ 42370239 (+)
G1740412 LOC106608825 other downstream 18651 43469818 ~ 43470325 (+)
G1740453 NA other downstream 73569 43524736 ~ 43526726 (+)
G1740752 NA other downstream 761619 44212786 ~ 44213230 (+)
LOC110500528 tmem256 other downstream 995393 44446186 ~ 44451532 (+)
LOC110500529 LOC106608720 other downstream 1010215 44461338 ~ 44480565 (+)

Expression


Co-expression Network