LOC110501537 (LOC106581838)


Basic Information

Item Value
gene id LOC110501537
gene name LOC106581838
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18596378 ~ 18609528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579183.2
TCTAATAGGCTTTTCAGCTGAAGAGAGGATTTTCTTTTCTATAGCTCTTTATTTAAACCAACATTTATGTAGGCCGCAGTATTGTGATCTATTTGCCCATGGGCGAGGTTGATTGGttttatttaacaaattatgtgaTTCAGTAGCATACTGAAAGGGTCCTGGAAACGCCTGCGTTTATGCATCTCTGACGGTTGTGTTTCATTGGGGTGGAGCTAGAGACCATTGACACGGCTAAGTACATCAGTACAGAGCTGGGGATCCGGGAGCGCCTCTTCGTAGGGATCCTGACGTCCAAAAGCACCATCAACACATTGGGAGTGGCCGTGAACCGCACCCTCAGCCACCACCTGGACACTGTCGTCTTCTTCACCGGCATGCGCAACCGCAAAGTGCCCCACGGCATGTTCGTGGTCACCCATGGGGACGAGAGGCTCATATGGAACATGTTCCAGACCATCAAGTACATCTTGGAGCACTATGTCCATGAGTATGACTGGTTCTATCTGGCCCAGGACGACACCTACACCGAGGCAGACCGGATCAAACAGCTGGTGGCTCACCTGAGCATGGACCGGGAGCTTTACATGGGCAGCCCTGAGGAGTTTATaggtggggagatggaggggaggtaCTGCTACGGTGGGTTTGGATACATTCTGTCCCGTACCCTGTTGCTCCGGCTCAAACCCTTCCTGGAGAACTGTAGGAATGACATCCTGAGCGCCAGGCCTGACGAGTGGCTGGGCAGATGCATCATTGATTATGCCAACACCAACTGTGTGGATGAGCATGAGGGGCTGCAGTACTACCATTACGAGATGGGCAAGAACTCAGATCCGAGTAAGGAGGACAATATGCAGTTTAAAAATGCCTTGACTGTCCACCCGGTGTCTGACCCTGAGCAGATGTATAGACTACACAAGCACTTCACTGAGATCGAACTGCAGAGGACATACGATGAGATTGAGAAGCTGCAGACGGAGATAAAGAATGTGAGTGAAGTGGCTTATGATGGCAACCGGAGCGCCCAGTGGCCCATTGGGATCAATCCACCCTTTGAGCCCAAGTCTCGCTTCGAGGTCCTTCGATGGGACTACTTCACGGAGGAACAGGTGTATTCGTGCATCGACGGCTTCCCCAAGTGTGAAATGGGCGGTATTGATCGTTTGGACGTGGCCGACGTCATCGAGATAGCCATGGGGGAGCTGAACAAGAAGTACAAGCCTGTCCTCCACTTGAAGAAGCAGCAGCTGATCAATGGCTACCGGCGCTTCGACCCCACTCGAGGCATGGAGTACACCCTGGACCTGCAGCTGGAGGTAGTCAACCAGAAAGGTCACAGTAGCTCCATCACCAAGAGGGTCCACCTGGTGCGTCCCCTGAGTCGCATCGAGATCATCCCCATGCCTTATGTCACAGAGGCCACCAGAGTTCACATCATCTTACCGCTGAACGTTCAGGATCGAGATTACGTCAACCATTTTCTTGAAGTGTTGGCTGCAAATTCGTTTGAGACCAGTGAAAACGCCATCTTGACTTTCCTGTTCATCTACGACCCATTTGAGGCCCAGCAGGTCAACCAGAATGACATCTTCGCCAGTGTTAAAACCCAGATCAATGCCTACGAACGCAAGTATCCAACAGTGAAGATCCCGTGGATAAGTGTCAAGACCGAAACCCCCTCTCAAATCAAATTCATGGACATCATCTCGAAGAAGCACCCAGTAGACACTCTGTTCTTCATCACCAACGTCAACACCAACGTCAACTCAGAGTTCCTCAACCGTTGCCGCATGAACTCCATCAACAACTGGCAGGTGTTCTTCCCAATCCACTTCCAGGACTACAACCCAGACATTGCCTTCCATAACCAGGAGCCCCCACCCGCAGTAGACCTGGTCAAGGACGCCGGACACTTTGACCGCAGTTCGTTCGAGGAGGCGTGCTTCTACAACACTGACTACATGGCGACGCGCACACGCATGGCCTCCGACGTGCAGGAGAATGAGGAGATCCTGGAGACCTTGGATATCTACGATATGTTTGTCAGGTACTCAACCCTGCATGTGTTCAGGGCTGTGGAGCCAGCCTTGCACCAGAAGTACCACTACCAGGCCTGTAACCCTCGGCTCAGTGAGGACATCTACCACAGGTGTGTCCAGAGCAACTTGGATGGCCTGGGAGCCCGTTCCCAGCTCGCCATGCTGTTATTTGAACAAGAGCAAGGAAATAGCACTTGATCACACCTCGCTTAGAAACTTCaccttgaatgtgtgtgtgattgggtgtatgtgaatgtgtgtgtgcatgtttgtgtgtttgcgtgcgtgtgattgtgtgcatgtctgttttAAAACTAGTGCAGTACATtcctaaacattttttttttttactgaatacAAAAATCCATGCTGGAACCAAATGGGGTGGTTTTGAACATTGAAAGTATTTTAAACCTTTGATTTGGTGGTCATGCAGGGATGCCtatatcaatatttttttaatatattagAAAAGTTCTACATACATTTGATGTTGCTCTCAAGGGTATGGCTTTTAACCTGCACAGCTTTTGATACTTGGTCCTTTGCAGTTTAGTAATCACTACTAAAGCACATCTCAATATGTGTGCCTTTTAATGTCTGTCGGTCCTCTTGTATTTTCATGTCCCTTGTCACATCAAGCAAAATAAGTAGATTTACATGTACACATTTATCAATATTTGAGGCCTCATATTTCCACACTACACAGTTCATATTTTAATGTGTAAGCTGGCATCTGAAATATAGATTCACTCTAGTCAAAGATGTTAAACGGTAGAAAGCTTTATGGCACTGACGTAATCAGATGCACCGTGAGATTACTGTTAGGTTAAGAGGATTGGACATTATGTGTCGGTACTGTAGGTCCCCGTAGGTGAGGTAGAAAACGAGCCCGTAGGGTCTCTTTAGGAGGTTGCAGCATTACACATTctttaaaaaatcaaataaaaagcaTATGATTGTCTGTTATTTAGAATAGGAAATCGTGTCATCTTTATCtgttacatttctatctgcaacactCTAAACATTTCACCCCTCTGAATACACGGTTTCAGTATGTACCACACTAAAATGTCATCTCAATATATTAAAGTAGCAATTTGAAAGCAGTTGCATTTTAAGAATGTAGTTATTGAGGGCAATCAGGATTGTGGTTTGTAATGTATACGTTGGTAGTCAACGTTGTAACATGAATGCTATTAAATTTCTATTGCATCGGAATATACCTgaagacatacagttgaagtcggaagtttacatacaccttagcatttcaactcagtttttcacaattcct
>XM_021579182.2
ATCCTGCTTTAATTTTATGGAAGAGGCTACGTAGGCCTACATGTTTTTAGTAGCGAAGGATGGTATTTTTTAATATAGCCAGCTACTAATATTTTGTATTTGGTTTGATGTACATAATTATCAAACGCGACTAAATTAGGCTGTAGAAAGGGGCCTACATAGTCAACGTTGAGAATGAGATTCTCAATGTTTATTTCTCTGCTGAGGCCGATCGGGCCGGTTATTATCGGTATTTCATTGGGATTTACCTTAAGTTTACTTAGTGTGAATTGGGTGGAGGAGTCTTGTTTCCTCAACGGGAAAGCGAGTGAAGAAATAAGTTTGTCCCAAGATGGGAATTCAAAAGGAGCAAGGAGACCCAATTCGATATCGACGGTCAAAGATGTGGACGCCGAGGAAGATTTTGAGCCAAGAATAGTGCCATATAAACCAGTCCAACAAAGCAAACCAAATAAACTTTTTCGGGCTAAGTACATCAGTACAGAGCTGGGGATCCGGGAGCGCCTCTTCGTAGGGATCCTGACGTCCAAAAGCACCATCAACACATTGGGAGTGGCCGTGAACCGCACCCTCAGCCACCACCTGGACACTGTCGTCTTCTTCACCGGCATGCGCAACCGCAAAGTGCCCCACGGCATGTTCGTGGTCACCCATGGGGACGAGAGGCTCATATGGAACATGTTCCAGACCATCAAGTACATCTTGGAGCACTATGTCCATGAGTATGACTGGTTCTATCTGGCCCAGGACGACACCTACACCGAGGCAGACCGGATCAAACAGCTGGTGGCTCACCTGAGCATGGACCGGGAGCTTTACATGGGCAGCCCTGAGGAGTTTATaggtggggagatggaggggaggtaCTGCTACGGTGGGTTTGGATACATTCTGTCCCGTACCCTGTTGCTCCGGCTCAAACCCTTCCTGGAGAACTGTAGGAATGACATCCTGAGCGCCAGGCCTGACGAGTGGCTGGGCAGATGCATCATTGATTATGCCAACACCAACTGTGTGGATGAGCATGAGGGGCTGCAGTACTACCATTACGAGATGGGCAAGAACTCAGATCCGAGTAAGGAGGACAATATGCAGTTTAAAAATGCCTTGACTGTCCACCCGGTGTCTGACCCTGAGCAGATGTATAGACTACACAAGCACTTCACTGAGATCGAACTGCAGAGGACATACGATGAGATTGAGAAGCTGCAGACGGAGATAAAGAATGTGAGTGAAGTGGCTTATGATGGCAACCGGAGCGCCCAGTGGCCCATTGGGATCAATCCACCCTTTGAGCCCAAGTCTCGCTTCGAGGTCCTTCGATGGGACTACTTCACGGAGGAACAGGTGTATTCGTGCATCGACGGCTTCCCCAAGTGTGAAATGGGCGGTATTGATCGTTTGGACGTGGCCGACGTCATCGAGATAGCCATGGGGGAGCTGAACAAGAAGTACAAGCCTGTCCTCCACTTGAAGAAGCAGCAGCTGATCAATGGCTACCGGCGCTTCGACCCCACTCGAGGCATGGAGTACACCCTGGACCTGCAGCTGGAGGTAGTCAACCAGAAAGGTCACAGTAGCTCCATCACCAAGAGGGTCCACCTGGTGCGTCCCCTGAGTCGCATCGAGATCATCCCCATGCCTTATGTCACAGAGGCCACCAGAGTTCACATCATCTTACCGCTGAACGTTCAGGATCGAGATTACGTCAACCATTTTCTTGAAGTGTTGGCTGCAAATTCGTTTGAGACCAGTGAAAACGCCATCTTGACTTTCCTGTTCATCTACGACCCATTTGAGGCCCAGCAGGTCAACCAGAATGACATCTTCGCCAGTGTTAAAACCCAGATCAATGCCTACGAACGCAAGTATCCAACAGTGAAGATCCCGTGGATAAGTGTCAAGACCGAAACCCCCTCTCAAATCAAATTCATGGACATCATCTCGAAGAAGCACCCAGTAGACACTCTGTTCTTCATCACCAACGTCAACACCAACGTCAACTCAGAGTTCCTCAACCGTTGCCGCATGAACTCCATCAACAACTGGCAGGTGTTCTTCCCAATCCACTTCCAGGACTACAACCCAGACATTGCCTTCCATAACCAGGAGCCCCCACCCGCAGTAGACCTGGTCAAGGACGCCGGACACTTTGACCGCAGTTCGTTCGAGGAGGCGTGCTTCTACAACACTGACTACATGGCGACGCGCACACGCATGGCCTCCGACGTGCAGGAGAATGAGGAGATCCTGGAGACCTTGGATATCTACGATATGTTTGTCAGGTACTCAACCCTGCATGTGTTCAGGGCTGTGGAGCCAGCCTTGCACCAGAAGTACCACTACCAGGCCTGTAACCCTCGGCTCAGTGAGGACATCTACCACAGGTGTGTCCAGAGCAACTTGGATGGCCTGGGAGCCCGTTCCCAGCTCGCCATGCTGTTATTTGAACAAGAGCAAGGAAATAGCACTTGATCACACCTCGCTTAGAAACTTCaccttgaatgtgtgtgtgattgggtgtatgtgaatgtgtgtgtgcatgtttgtgtgtttgcgtgcgtgtgattgtgtgcatgtctgttttAAAACTAGTGCAGTACATtcctaaacattttttttttttactgaatacAAAAATCCATGCTGGAACCAAATGGGGTGGTTTTGAACATTGAAAGTATTTTAAACCTTTGATTTGGTGGTCATGCAGGGATGCCtatatcaatatttttttaatatattagAAAAGTTCTACATACATTTGATGTTGCTCTCAAGGGTATGGCTTTTAACCTGCACAGCTTTTGATACTTGGTCCTTTGCAGTTTAGTAATCACTACTAAAGCACATCTCAATATGTGTGCCTTTTAATGTCTGTCGGTCCTCTTGTATTTTCATGTCCCTTGTCACATCAAGCAAAATAAGTAGATTTACATGTACACATTTATCAATATTTGAGGCCTCATATTTCCACACTACACAGTTCATATTTTAATGTGTAAGCTGGCATCTGAAATATAGATTCACTCTAGTCAAAGATGTTAAACGGTAGAAAGCTTTATGGCACTGACGTAATCAGATGCACCGTGAGATTACTGTTAGGTTAAGAGGATTGGACATTATGTGTCGGTACTGTAGGTCCCCGTAGGTGAGGTAGAAAACGAGCCCGTAGGGTCTCTTTAGGAGGTTGCAGCATTACACATTctttaaaaaatcaaataaaaagcaTATGATTGTCTGTTATTTAGAATAGGAAATCGTGTCATCTTTATCtgttacatttctatctgcaacactCTAAACATTTCACCCCTCTGAATACACGGTTTCAGTATGTACCACACTAAAATGTCATCTCAATATATTAAAGTAGCAATTTGAAAGCAGTTGCATTTTAAGAATGTAGTTATTGAGGGCAATCAGGATTGTGGTTTGTAATGTATACGTTGGTAGTCAACGTTGTAACATGAATGCTATTAAATTTCTATTGCATCGGAATATACCTgaagacatacagttgaagtcggaagtttacatacaccttagcatttcaactcagtttttcacaattcct

Function

NR:

description
chondroitin sulfate synthase 2-like isoform X1

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579183.2 False 3345 mRNA 0.47 4 18596378 18609528
XM_021579182.2 True 3577 mRNA 0.46 4 18596616 18609528

Neighbor

gene id symbol gene type direction distance location
LOC110501535 LOC106581833 coding upstream 185868 18406709 ~ 18410510 (+)
LOC110501534 cryba2 coding upstream 191824 18401881 ~ 18404554 (+)
LOC110501533 LOC106581832 coding upstream 200938 18391837 ~ 18395440 (+)
kalrna LOC106581831 coding upstream 210248 18101519 ~ 18386130 (+)
LOC110501528 LOC106581829 coding upstream 692375 17869458 ~ 17904003 (+)
LOC110502061 LOC106586148 coding downstream 330426 18939954 ~ 18951668 (+)
LOC110502062 NA coding downstream 377495 18987023 ~ 18988418 (+)
stat4 stat4 coding downstream 472160 19081688 ~ 19115216 (+)
stat1b LOC106586142 coding downstream 524206 19133734 ~ 19173341 (+)
LOC110501548 LOC106586143 coding downstream 576548 19186076 ~ 19197714 (+)
G1784035 LOC106581830 non-coding upstream 537242 18058334 ~ 18059136 (+)
G1784034 NA non-coding upstream 538251 18057916 ~ 18058127 (+)
G1784033 NA non-coding upstream 539503 18056670 ~ 18056875 (+)
G1784031 NA non-coding upstream 543778 18052289 ~ 18052600 (+)
G1784021 NA non-coding upstream 554242 18041937 ~ 18042136 (+)
G1784381 NA non-coding downstream 1756 18611284 ~ 18614191 (+)
G1784458 NA non-coding downstream 121641 18731169 ~ 18731408 (+)
G1784459 NA non-coding downstream 122706 18732234 ~ 18732519 (+)
G1784460 NA non-coding downstream 124028 18733556 ~ 18733779 (+)
G1784466 NA non-coding downstream 132427 18741955 ~ 18742191 (+)
G1783691 LOC106586162 other upstream 685152 17909900 ~ 17911226 (+)
G1783622 NA other upstream 853943 17741757 ~ 17742435 (+)
G1783087 NA other upstream 1300019 17295953 ~ 17296359 (+)
G1782390 NA other upstream 1554705 17006034 ~ 17041673 (+)
G1784476 asic4 other downstream 156791 18766319 ~ 18767140 (+)
ybey ybey other downstream 961052 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 1007467 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 1051581 19661109 ~ 19661926 (+)

Expression


Co-expression Network