LOC110501697 (LOC106582162)


Basic Information

Item Value
gene id LOC110501697
gene name LOC106582162
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28701867 ~ 28702664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579434.2
AAACCTCAGTGCATTATGGGCCTCTATGCCATGTTGCTGAGTCAGCGGTGTGTACAATGGGGCCACAGGTATAAAAAGAAAGGTTTTAAACCAGTAGGATATCAGTtccagagcagcagcagcagcagcaacagcaggacCCCCATGAAGCAAGCCAAAATGCCCAACATGAACAGCAGGATAGTCTTCTACGAGGACAGGAACTTCATGGGCCGCTCCCATGAGTGCAGCACCGACTGCCCTGACATGTACTCCTTCCTGAGCCGCTGCCACTCCTGCAAGGTTGAGGGTGGCTGCTTCATGCTGTATGACCGCCCCAACTACATGGGAAACCAGTACTTCATGAGGAAGGGAGAGTACGCTGACTACCACATGATGAGAATGGCCAACGGTATGAGGTCCTGCCGCATGATCCCTATGCACAGGGGATCTTACAGGATGAAGATCTACGAGAGAGAGAGCTTCGGCGGTCAGAGCCACGAGATCATGGAGGACTGTGACAACATCATGGATCGTTACCGCATGTCCAGCTGTATGTCCTGCAACATCCAGGACGGCCACTGGCTCATGTATGAGATGCCCCACTTCAGAGGCAGGATGATGTTCATGAGGCCTGGAGAGTACAGGCACTTCAGCATGGGTATGGGAAGCATGGGTGGCATGGGCGGCATGGGTGGCATGAGGTTCCAGAGCATGAGGCGTATCAACGAGTCCTGGTACTAGATGCTGCTCTTTACAATGATGTAAATGAGACAAGCCATtgaataaaaatatttaaataaaacattttaaaagtta

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579434.2 True 798 mRNA 0.51 1 28701867 28702664

Neighbor

gene id symbol gene type direction distance location
LOC110502084 NA coding upstream 305517 28236220 ~ 28400108 (+)
trnaa-ugc-174 NA coding upstream 411570 28290225 ~ 28290297 (+)
LOC110501694 LOC106582055 coding upstream 625296 28072420 ~ 28076571 (+)
LOC110501693 LOC106582057 coding upstream 649848 28036917 ~ 28052019 (+)
ccdc93 ccdc93 coding upstream 665103 28028462 ~ 28036764 (+)
epha6 LOC106582188 coding downstream 53126 28755790 ~ 28976739 (+)
LOC110502085 LOC106582160 coding downstream 277554 28977890 ~ 28984226 (+)
LOC110502121 cld14 coding downstream 290669 28993333 ~ 28994549 (+)
LOC110501700 LOC106582186 coding downstream 295099 28997763 ~ 29010281 (+)
LOC110501701 LOC106586531 coding downstream 360975 29063639 ~ 29094498 (+)
G1796461 NA non-coding upstream 28746 28672918 ~ 28673121 (+)
G1796440 NA non-coding upstream 42031 28659598 ~ 28659836 (+)
G1796436 NA non-coding upstream 43593 28658045 ~ 28658274 (+)
G1796412 NA non-coding upstream 59670 28641899 ~ 28642197 (+)
G1796405 NA non-coding upstream 67421 28634028 ~ 28634446 (+)
G1796500 NA non-coding downstream 9538 28712202 ~ 28712508 (+)
G1796503 NA non-coding downstream 12363 28715027 ~ 28715304 (+)
G1796505 NA non-coding downstream 14400 28717064 ~ 28717353 (+)
G1796520 NA non-coding downstream 34331 28736995 ~ 28737221 (+)
G1796537 NA non-coding downstream 47120 28749784 ~ 28749986 (+)
G1795550 NA other upstream 609751 28091565 ~ 28092116 (+)
G1795411 NA other upstream 788992 27898367 ~ 27912875 (+)
G1793717 NA other upstream 2385624 26315826 ~ 26316243 (+)
G1793045 NA other upstream 2970113 25731326 ~ 25731754 (+)
G1797582 NA other downstream 1041528 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 1220893 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1797992 30500656 ~ 30545954 (+)

Expression


Co-expression Network