LOC110501705


Basic Information

Item Value
gene id LOC110501705
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29260930 ~ 29264418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501705
atggcagcctcCCGCACTTCtctaattcagagggTTGAAGGTGTGTGCAGGATCAAGGCTAAGCTGGAGGAGAACAACCCAGACAGAGTGAAGCCCTTCATGGCTGGAGCTCAGGAGGAGATCAAGAAGATCATGGGCAACATGAAGAACTACCAGTTCTTTACAGGTGTATGAACCCAGATGGTATGATTGGTCTGCTGGACTTCCGTGAGGACGGCATCACTTCCTTTATGACATTCTTCAACGACGGCCTGGAGATCAAGAAATTAGTCCCTTTAGCCCAGTCTACTTATGTTATAACTTATAACCAGTCTACTCGTGTTATAACcactgttctttttctctctcgcagTAACACTCTGGTCTAACATACTGACCAGACCGGACGCGTTTCCTCaagcgtcgcaaaataaatttagaaatccatgttgttcaattattgcacccacactgcttgcgcgTGCCAACGAGTGTCTGCATTGCCAacggctaaaatagaagtcctttctatttctgatgcagatcacgctgaaagtcctgcctctcccatcggtttatagaagcaggtacccacgtgccatctcctc

Function

NR:

description
translationally-controlled tumor protein homolog

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501705 True 587 mRNA 0.47 3 29260930 29264418

Neighbor

gene id symbol gene type direction distance location
tpt1 tpt1 coding upstream 2803 29255357 ~ 29258127 (+)
LOC118943584 LOC106582182 coding upstream 17278 29227671 ~ 29243652 (+)
LOC110501703 LOC106582182 coding upstream 48088 29178871 ~ 29212842 (+)
LOC110501702 LOC106582183 coding upstream 93177 29102113 ~ 29167753 (+)
LOC110501701 LOC106586531 coding upstream 166432 29063639 ~ 29094498 (+)
LOC110501706 LOC106582180 coding downstream 26519 29290937 ~ 29292575 (+)
tsc22d1 LOC107713726 coding downstream 76369 29340787 ~ 29427406 (+)
LOC110501709 LOC106582175 coding downstream 235732 29500150 ~ 29589083 (+)
LOC118943646 NA coding downstream 356694 29621005 ~ 29622074 (+)
LOC110501715 LOC106582169 coding downstream 594337 29858755 ~ 29872101 (+)
G1796955 NA non-coding upstream 11156 29249499 ~ 29249774 (+)
G1796954 NA non-coding upstream 12765 29247937 ~ 29248165 (+)
G1796862 NA non-coding upstream 217473 29043150 ~ 29043457 (+)
G1796841 NA non-coding upstream 233462 29027075 ~ 29027468 (+)
G1796839 NA non-coding upstream 235257 29024618 ~ 29025673 (+)
G1796971 NA non-coding downstream 11179 29275597 ~ 29275818 (+)
G1796977 NA non-coding downstream 31286 29295704 ~ 29295929 (+)
G1796994 NA non-coding downstream 51173 29315591 ~ 29315838 (+)
G1796996 NA non-coding downstream 54592 29319010 ~ 29319230 (+)
G1796998 NA non-coding downstream 57863 29322281 ~ 29322495 (+)
LOC110501700 LOC106582186 other upstream 250657 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 276704 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1168814 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1222852 28036917 ~ 28052019 (+)
G1795411 NA other upstream 1348055 27898367 ~ 27912875 (+)
G1797582 NA other downstream 479774 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 659139 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1236238 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1624243 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1982063 31246481 ~ 31292205 (+)

Expression


Co-expression Network