LOC110501706 (LOC106582180)


Basic Information

Item Value
gene id LOC110501706
gene name LOC106582180
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29290937 ~ 29292575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579445.2
gaggagagaaagggagaggcagacTCATTCTGCTACCAGTGCGCTCTGCGCTCCTCTCTATGCCAGTACCTCTCCGAGtggctcccacacacacactcactttttACTGCACGCTACACACACTTATCCTGAggaccacagacacagacaaagacactGAGGTTGTTGAGTGGGAGCGGCATGGAATGGAACCTCAGAAGGATGGACAGTGAACTGAGACAGATCAACTCGGACCTGCTGCAGCCCAGTAAGAGCATCAAGAAGCCCTCGTCAGGCACCATCACCCTCAACGTGGGGGGCTTTCTGTATGCCGCGCACCGCACCACCCTCAGCCGCCACCAGGGGTCAGTGTTGGAGGAGCTGGCCAGCGGCAAAAAGACCGTCCAGCACACTGACTCCATGGGCAACCCCTTCATCGACCGTGACGGCCCTGTGTTCCGACACATCCTCAACTTCTTACGGACCGGAGACCTGCAGCTACCCGACGACTTCCGAGAGGTGGGCCTTCTGAGACGGGAAGCAGAGTTCTACCGCCTCAGTGGATTGGTGGAGGCCATTTTGGAGTGGGAGGAGCTGCGGGCGGTACAGCGGGAACCCGCCTTCCTGGAGGTGACTGACGAGAGGTCACAGGGCTTCAAGGTGTACTGTAGTGACCCCAGTTTCATTGACAAGGTCAAAGGTCGCCTGGTTCAGATCTCAAAGAGCCGTCTGGACGGCTTCCCGGAGGAGTTTGAAGTGTCGTCCAACGTGATCCAGTTCCGCCACTTCATCAAGTCAGAACCGGGCTCCAGGCTGGTGCTGAAGCAGGACAGTACCTTCGTGTGTACTCTGGAGTGTCTGAAGCTAGAGACGGTGATGCTGGCTCTGAAGGCTGGCTTCTCTATCATCACCTCTCTGGACAGCAGCAAGGGATCTGTGGTGGCCGCAGAGGCACTGCACTTTGTCAagtaagagagggaagagaggggaagagggaaagatgggggagagggatcTGGGAGAGAATGGACAGGGAGGTagaaagagaagggaagagaatgGGGCAGGTAACAGGCAGGTAGAGAGGGGAactagagggaggagaaaggtgTCTGATTCCAGATTGACCCCTAGCCCCTGGGCTGGAACTGATGCAGGACAGAACACACACTCTCAGAGGAAAAGTCTCCTACTGGATTGCATCAAGCTGCTTTTTCCATCCTGTCTGCTCCACCTTCAAACCAGCCTTTGTGTGCACAGTGaggtattacagtgtgtgtgttctgttgctGTGGTCTAATATTTAGTTGTGTGACCAAGCCTTTTTCTGGATTCTGAGGGGAGTGGTAGAGTGGAAGAATGTACTGAATGACCTACTGACGGTTGCTGATTATTGGACGAAAACAATTGTTTTATTCCAGAAACTTCTCACACAGCCTGACTGGATGAGAGGTGTGCTTTGCAGAAAATATACACGTAGGGTTTAGACCCAAGGGTTCAAATCTAGCATGATGCATGCGCAGTGAAGATTTTCAAATCAGAAACCAACTTTGTGATTGTTTGATTGCCTGTGCTGTGAGTGAGTAAGCAACAATGTGTTCATTTGGATATGTGAATGTTTTGTTTTACACACAATAAAAGTAATGAATATCGTCAGTCA

Function

NR:

description
BTB/POZ domain-containing protein KCTD4-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579445.2 True 1639 mRNA 0.52 1 29290937 29292575

Neighbor

gene id symbol gene type direction distance location
LOC110501705 NA coding upstream 26519 29260930 ~ 29264418 (+)
tpt1 tpt1 coding upstream 32810 29255357 ~ 29258127 (+)
LOC118943584 LOC106582182 coding upstream 47285 29227671 ~ 29243652 (+)
LOC110501703 LOC106582182 coding upstream 78095 29178871 ~ 29212842 (+)
LOC110501702 LOC106582183 coding upstream 123184 29102113 ~ 29167753 (+)
tsc22d1 LOC107713726 coding downstream 48212 29340787 ~ 29427406 (+)
LOC110501709 LOC106582175 coding downstream 207575 29500150 ~ 29589083 (+)
LOC118943646 NA coding downstream 328537 29621005 ~ 29622074 (+)
LOC110501715 LOC106582169 coding downstream 566180 29858755 ~ 29872101 (+)
LOC118943587 NA coding downstream 601551 29894126 ~ 29903673 (+)
G1796971 NA non-coding upstream 15119 29275597 ~ 29275818 (+)
G1796955 NA non-coding upstream 41163 29249499 ~ 29249774 (+)
G1796954 NA non-coding upstream 42772 29247937 ~ 29248165 (+)
G1796862 NA non-coding upstream 247480 29043150 ~ 29043457 (+)
G1796841 NA non-coding upstream 263469 29027075 ~ 29027468 (+)
G1796977 NA non-coding downstream 3129 29295704 ~ 29295929 (+)
G1796994 NA non-coding downstream 23016 29315591 ~ 29315838 (+)
G1796996 NA non-coding downstream 26435 29319010 ~ 29319230 (+)
G1796998 NA non-coding downstream 29706 29322281 ~ 29322495 (+)
G1797008 NA non-coding downstream 42370 29334945 ~ 29335160 (+)
LOC110501700 LOC106582186 other upstream 280664 28997763 ~ 29010281 (+)
LOC110502085 LOC106582160 other upstream 306711 28977890 ~ 28984226 (+)
G1795550 NA other upstream 1198821 28091565 ~ 28092116 (+)
LOC110501693 LOC106582057 other upstream 1252859 28036917 ~ 28052019 (+)
G1795411 NA other upstream 1378062 27898367 ~ 27912875 (+)
G1797582 NA other downstream 451617 29744192 ~ 29744854 (+)
LOC118943632 LOC100194703 other downstream 630982 29917773 ~ 29933035 (+)
G1798168 NA other downstream 1208081 30500656 ~ 30545954 (+)
G1798397 NA other downstream 1596086 30888661 ~ 30891067 (+)
G1798579 NA other downstream 1953906 31246481 ~ 31292205 (+)

Expression


Co-expression Network