LOC110501812 (LOC106582346)


Basic Information

Item Value
gene id LOC110501812
gene name LOC106582346
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37153568 ~ 37221890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959227.1
AGCACAGAGTAGCACTACTGCACGCGCGCAAACAGATACCGGTTGGTTAATTCACACGAACTGTTTACCAAGAAAGCACTGTATCGTATCGTTCCTCTCTCTGTTGACAGTTTGTAAGCAACAGTGCAAAGCTGGAGGAACCAACTCAACAACCGCAACAGCAGTTGCCATGGACCGGGACAGAGAGGCAGCCTCCCCCTTGGACCGACGAACTAGCCGAAATGTCCCGGCACATCTACACCCGTCACGGTGCAGGCGATGGACTCCAGAAGGTGAATAGAGGGACCTACTCCAGACGCAGCCGGCTAAAGAGGTCTGACGGGAGCACCAACTCCACCAGCTTCATcctcagacagGGTTCAGCTGACTCTTACACTAGCCGACCATCGGACTCAGATGTCTCCTTGGAGGAGGAACCGGCAGGAGGAAAGCTGGAGAAGGAGCAGCAGGCTGCTGTACAGCTGGAGAGGGCCAAGGCCAAAGCGGTGGCCTTTGCTGTGAAGACTAACATCAGTTACTGTGGAGCCCTGGATGAGGATGTCCCTGTGGCAGGAACCGCCATCTCCTTCGATGCCAAGGACTTCCTGCACATTAAAGAGAAGTACAGTAATGACTGGTGGATCGGCCGGCTGGTGAAGGAGGGCTGTGAGATTGGATTCATCCCCAGCCCTCTGAAACTAGAGAACATCCGTCTACAGCAGGAGCAGAAGAGAGGTACACGCTCTTACGGTAAGTCCAGTGGGAATTCCTCCTCCAGTCTAGGAGACATGGTTTCAGGCGGGTTCAAATCCAACCCTCCCTCTGCAGGAAAACAGAAGCAGAAAGTGACTGAAAACATCCCTCCCTATGACGTGGTCCCCTCCATGAGACCAGTGGTCCTGGTAGGACCGTCCCTGAAGGGATATGAGGTGACAGACATGATGCAGAAAGCGCTCTTTGACTTCCTGAAGCACAGGTTTGATGGCAGGATATCTATTACGAGAGTAACAGCAGATATAGCTCTGGCCAAGAGGTCAGTGCTCAACAACCCCAGCAAGCGGGCCATCATCGAAAGATCCAACACCAGGTCCAACCTAGCGGAGGTTCAGAGTGAGATTGAGAGGATATTTGAGCTGGCCAGATCCTTACAGCTGGTGGTCCTGGATGCTGACACAATCAACCATCCAACCCAGCTCATAAAGACATCCTTAGCACCTATCATCGTGCATGTTAAAGTATCCTCTCCTAAAGTTCTTCAGCGGTTGATCAAGTCGAGAGGGAAATCCCAGAGCAAACACTTGAATGTGCAGCTGGTGGCAGCAGACAAACTAGCACAGTGCCCTCCGGAAATGTTTGACATCATTCTGGATGAGAATCAGCTGGAGGATGCATGTGATCACCTGGCAGAGTACCTGGAAGCCTACTGGAGGGcaacacacacctccctgagcaccCCTCTCAACCCTCTGCTGGGCCGCAACCTGGGATCCACTGCCCTCACTCCGTACCCCACAGCTATAACTGGGCTGGTCAACCAACCGGGTCAAAGAAACACAAACAGGAACAGCAATCACACAGCAGGAGAACACTCGCCATCAGACGAGAACTACCACAATGAGCGGCAGAGGAAGAGCCGTAACCGCCTGTCCTCCGGCTCGCAGCACAGCCGGGACCAGGTCCACTACCCCCTGGTGGAGGAGAATTATCATGACCCCTATCAGGACACGTACAAGCCCCACCGCAACCGTAACGGCTCCCCCGGAAGCTACAGTCATGACTCCAGGCACAGGCTTTGAGCTGAAGACCCCCTTATGTCACTTAGGCTTCTCTTCCCTTCACAGTGGGTACGACACAGCCACACGACCACTCTCTAGTTTAATTGTACTGTAACCAACTTTTTTTATAATGTGTTAGTACCTCGCTTTTCCTCTGGCACTGGTTCACGGTGAAAACGTGAACATTGACCAACTAAAAATCTAATCTCTATGCCTTTTTCTTATGAGGGAGACAAAAAATAGGATGAGGGGCAGATTTTCACCATGGTTTTTTTCTAAGGGAAGGCCCAACTCTGGGCTTGTCTTCTTTTTAACATGGCAAGGCCTTGACATGTTGGTGTGAAAGGGGTGGCCATGTGGTCTGGCCATCGACTCCCTGTTGTCTCAGTGTTAGCAGGGCTAGCTGTCGTGGTGGTCTTGGTGACCCATCAACACCTGCCTCGAACCAGTGCCAGACAGCGTCAAGCGTCCCTTGATCAGCACAGAACTTCTTTGCACATTTCCAGGAGCCAATAGCAGCAGAGTCAGTGCACTGTATATTTAATTAATGTCACTAAGTTGTTTGAAATTGTCTTGGATTTGAGTGTTTTCAGTCCTGTAGCCTACAACCAGTTTCTCAGAGTCGGCAAAGTTCCTGTTTGTCAAAATGTTGAGGGATTTTTCTAGCGGGGTCCTGAATCGGAATCTTCTAGTTTCCAGGGCTTTTATCCCCTTCTTCTCCTCAATGATACTTAGCTAATGCCattagggcggcagggtagcctagtggttagagcattggactagtaaccgagagttcaaatccccgagctgacaaggtacaaatctgttgttctgcccctgaactggcagttaacccactgttcgtaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtttaaaaaataataataattgcgaCGTGCCGCACAGGACAAGAAATCACACTTTTGTAATGAAAATTTGCTAAGTAAATTAAGTGAGTTGCAAGTTTCATATCTTGTGCTCTTTCAGGAAAGGGTGCGTCCCTTCGTTATATACAGTACACTCTAGTGTGAGGACTATTCCTATCAGTTTTTAGTATGCTGCAACCAAAGGAAATAGCCTAATTTAAGTTTTTCCATTAGTACTCATGACTAGGAATaaaatatacagtagagagggatGATATGCCCATTGAGCTTAATTTTAACTGTTTAAATGGGTTTCATAATTGACTAATGATCGAAGGATAGGCTTTAGTATAGATGGATATACTTCCAATCAGGGAAATATTGATCATTTGAATTGAGGTATACCCCATTCCATTTACTGTACATGCAGCCTGTTATAGTGATGCCATTTGCATCATATTTTATTGTCTTTTAAATGGTCTTGTGAATTCAAGTGTAATATATTCAAAGAAAGTCCTGCTTGGCAAGTAAAGAAATAACGTCTGTCCGTGGACCGACGTTTCATTGGTTTAGAATGATCAATGGCAGCATGTCTTTTTgtcaatatacagtatgtcatggAATAATGATTCAGTGCTGTTATGTATGTGTTAGGCCAGAAAAATCCCTAGGAGACTGTAGTTGAGTGAGTGACTGTTGTTTAGGACAGTCTCAATTGAACAATTAATTTAGTCAACAGTAACACATAAGCGGATGAGAGCGCTTCATTCAGTCTGCTATGAAGTTATATTGTTGATTTCATGAAACAAAGAAATGGTTTTCTTTGGTCATAATTActatgtaaagcactttgtgtgTCTAGAAAGGCGATATATAAGTCAAATCaattaattgtaattatttgccaaCCATCAGCTCTTCTTTTCAATGCCCCATTTAAAAGTCTTCCATGTCCTGgccattaaaaataaataatgttgTTTTTTAATGAACGATTTTACTTTCCTAAGCATTGCATATCAAAACACCATGACAAATGAATTGTTCAAAGCCTTATTGCTTAACCCAGGCCTTGTTTTAAACTTTTTTGGGGGGTACTGTAGCAATGGAGGGGCTTCTCTCCTATCCATATACATATCCTCAAAATGTAGCATTTTATTTCACAGTTTTTATGGTCTAAATGGTTAGGAACAATTATAGAGGTTTAGTCATatgaagagagtgtgaagggTACAGACTAGGGAGTTCTGTATAGAGGTTCATGTCAGAGAATGTCTCTCTGTATGCTACCAGTTATGCATAGATCACCAATAGAGGGTATGTATCAGAAACCCCCAACCAAACAAATCACAacatattttatttgttttcttCGAATACCTTCTTCTGTTGCCAAGATAGCTTGATTTCTGTTAGTGCTGTGTTCTATAAAGGCATGCTGGTAAAGAGAAAAACAATTGGACAAACTAATCtagagaaaaagagaaatgtaCTATGCAAATGTGTACAGTGCTGCATGTTGATGCTTTTCCTCCCTCGGCTACTTAGCGGCTTCGTTGGAGTTCAATAAGATTGTGTTCTTGTTATTTTTGGGAAAGATAAAATTCAAAAGGGAAATGCGAAACTGCATGACTAATACAACTTTTTAATTTATCAAGAAGAAAGATAAATATGTTTTAtgggaaattgatgtaaaatgaGAACTACCTAGTTAAAATGAACTTTTTTATCAAATAAATTCAGAGCTCTGTTATAATGATG
>XM_036959228.1
TGCTCTGTCATCAGCCTGTGATTGAGGAATGGTtggctctcctctcctgctctctgtttGGAAGGGAGATAAAATGCCAGGTCTGGATCTAGACAGCAGCATCTGAGGATAACTGAAGCTCTGCGTTGCCTTATTAAGATGATGGAAATAAGGACAATTCTTTAAGCTAGGGGGGGAAACCATCTAATTCACCGTCAAGGCTCAGGGAGGAGAACAATAAGAAAAACTCCACCTGTTTCTCATTTCTGCTTTAGTGTTGTTGTTTTCTAGAGGGAATGTAACCCCTGTTAATCCATCTCTGGTGCTGGTTCTTCAAGCCATCCTTGCTATTTTTGTCAATTCTCAAGAGGTGCTTGTTGGAATATCAAACCTCCATGTATGATAATTTGTACCTACATGGATTGGAAGACTCGGAGGCGGGTTCAGCTGACTCTTACACTAGCCGACCATCGGACTCAGATGTCTCCTTGGAGGAGGAACCGGCAGGAGGAAAGCTGGAGAAGGAGCAGCAGGCTGCTGTACAGCTGGAGAGGGCCAAGGCCAAAGCGGTGGCCTTTGCTGTGAAGACTAACATCAGTTACTGTGGAGCCCTGGATGAGGATGTCCCTGTGGCAGGAACCGCCATCTCCTTCGATGCCAAGGACTTCCTGCACATTAAAGAGAAGTACAGTAATGACTGGTGGATCGGCCGGCTGGTGAAGGAGGGCTGTGAGATTGGATTCATCCCCAGCCCTCTGAAACTAGAGAACATCCGTCTACAGCAGGAGCAGAAGAGAGGTACACGCTCTTACGGTAAGTCCAGTGGGAATTCCTCCTCCAGTCTAGGAGACATGGTTTCAGGCGGGTTCAAATCCAACCCTCCCTCTGCAGGAAAACAGAAGCAGAAAGTGACTGAAAACATCCCTCCCTATGACGTGGTCCCCTCCATGAGACCAGTGGTCCTGGTAGGACCGTCCCTGAAGGGATATGAGGTGACAGACATGATGCAGAAAGCGCTCTTTGACTTCCTGAAGCACAGGTTTGATGGCAGGATATCTATTACGAGAGTAACAGCAGATATAGCTCTGGCCAAGAGGTCAGTGCTCAACAACCCCAGCAAGCGGGCCATCATCGAAAGATCCAACACCAGGTCCAACCTAGCGGAGGTTCAGAGTGAGATTGAGAGGATATTTGAGCTGGCCAGATCCTTACAGCTGGTGGTCCTGGATGCTGACACAATCAACCATCCAACCCAGCTCATAAAGACATCCTTAGCACCTATCATCGTGCATGTTAAAGTATCCTCTCCTAAAGTTCTTCAGCGGTTGATCAAGTCGAGAGGGAAATCCCAGAGCAAACACTTGAATGTGCAGCTGGTGGCAGCAGACAAACTAGCACAGTGCCCTCCGGAAATGTTTGACATCATTCTGGATGAGAATCAGCTGGAGGATGCATGTGATCACCTGGCAGAGTACCTGGAAGCCTACTGGAGGGcaacacacacctccctgagcaccCCTCTCAACCCTCTGCTGGGCCGCAACCTGGGATCCACTGCCCTCACTCCGTACCCCACAGCTATAACTGGGCTGGTCAACCAACCGGGTCAAAGAAACACAAACAGGAACAGCAATCACACAGCAGGAGAACACTCGCCATCAGACGAGAACTACCACAATGAGCGGCAGAGGAAGAGCCGTAACCGCCTGTCCTCCGGCTCGCAGCACAGCCGGGACCAGGTCCACTACCCCCTGGTGGAGGAGAATTATCATGACCCCTATCAGGACACGTACAAGCCCCACCGCAACCGTAACGGCTCCCCCGGAAGCTACAGTCATGACTCCAGGCACAGGCTTTGAGCTGAAGACCCCCTTATGTCACTTAGGCTTCTCTTCCCTTCACAGTGGGTACGACACAGCCACACGACCACTCTCTAGTTTAATTGTACTGTAACCAACTTTTTTTATAATGTGTTAGTACCTCGCTTTTCCTCTGGCACTGGTTCACGGTGAAAACGTGAACATTGACCAACTAAAAATCTAATCTCTATGCCTTTTTCTTATGAGGGAGACAAAAAATAGGATGAGGGGCAGATTTTCACCATGGTTTTTTTCTAAGGGAAGGCCCAACTCTGGGCTTGTCTTCTTTTTAACATGGCAAGGCCTTGACATGTTGGTGTGAAAGGGGTGGCCATGTGGTCTGGCCATCGACTCCCTGTTGTCTCAGTGTTAGCAGGGCTAGCTGTCGTGGTGGTCTTGGTGACCCATCAACACCTGCCTCGAACCAGTGCCAGACAGCGTCAAGCGTCCCTTGATCAGCACAGAACTTCTTTGCACATTTCCAGGAGCCAATAGCAGCAGAGTCAGTGCACTGTATATTTAATTAATGTCACTAAGTTGTTTGAAATTGTCTTGGATTTGAGTGTTTTCAGTCCTGTAGCCTACAACCAGTTTCTCAGAGTCGGCAAAGTTCCTGTTTGTCAAAATGTTGAGGGATTTTTCTAGCGGGGTCCTGAATCGGAATCTTCTAGTTTCCAGGGCTTTTATCCCCTTCTTCTCCTCAATGATACTTAGCTAATGCCattagggcggcagggtagcctagtggttagagcattggactagtaaccgagagttcaaatccccgagctgacaaggtacaaatctgttgttctgcccctgaactggcagttaacccactgttcgtaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtttaaaaaataataataattgcgaCGTGCCGCACAGGACAAGAAATCACACTTTTGTAATGAAAATTTGCTAAGTAAATTAAGTGAGTTGCAAGTTTCATATCTTGTGCTCTTTCAGGAAAGGGTGCGTCCCTTCGTTATATACAGTACACTCTAGTGTGAGGACTATTCCTATCAGTTTTTAGTATGCTGCAACCAAAGGAAATAGCCTAATTTAAGTTTTTCCATTAGTACTCATGACTAGGAATaaaatatacagtagagagggatGATATGCCCATTGAGCTTAATTTTAACTGTTTAAATGGGTTTCATAATTGACTAATGATCGAAGGATAGGCTTTAGTATAGATGGATATACTTCCAATCAGGGAAATATTGATCATTTGAATTGAGGTATACCCCATTCCATTTACTGTACATGCAGCCTGTTATAGTGATGCCATTTGCATCATATTTTATTGTCTTTTAAATGGTCTTGTGAATTCAAGTGTAATATATTCAAAGAAAGTCCTGCTTGGCAAGTAAAGAAATAACGTCTGTCCGTGGACCGACGTTTCATTGGTTTAGAATGATCAATGGCAGCATGTCTTTTTgtcaatatacagtatgtcatggAATAATGATTCAGTGCTGTTATGTATGTGTTAGGCCAGAAAAATCCCTAGGAGACTGTAGTTGAGTGAGTGACTGTTGTTTAGGACAGTCTCAATTGAACAATTAATTTAGTCAACAGTAACACATAAGCGGATGAGAGCGCTTCATTCAGTCTGCTATGAAGTTATATTGTTGATTTCATGAAACAAAGAAATGGTTTTCTTTGGTCATAATTActatgtaaagcactttgtgtgTCTAGAAAGGCGATATATAAGTCAAATCaattaattgtaattatttgccaaCCATCAGCTCTTCTTTTCAATGCCCCATTTAAAAGTCTTCCATGTCCTGgccattaaaaataaataatgttgTTTTTTAATGAACGATTTTACTTTCCTAAGCATTGCATATCAAAACACCATGACAAATGAATTGTTCAAAGCCTTATTGCTTAACCCAGGCCTTGTTTTAAACTTTTTTGGGGGGTACTGTAGCAATGGAGGGGCTTCTCTCCTATCCATATACATATCCTCAAAATGTAGCATTTTATTTCACAGTTTTTATGGTCTAAATGGTTAGGAACAATTATAGAGGTTTAGTCATatgaagagagtgtgaagggTACAGACTAGGGAGTTCTGTATAGAGGTTCATGTCAGAGAATGTCTCTCTGTATGCTACCAGTTATGCATAGATCACCAATAGAGGGTATGTATCAGAAACCCCCAACCAAACAAATCACAacatattttatttgttttcttCGAATACCTTCTTCTGTTGCCAAGATAGCTTGATTTCTGTTAGTGCTGTGTTCTATAAAGGCATGCTGGTAAAGAGAAAAACAATTGGACAAACTAATCtagagaaaaagagaaatgtaCTATGCAAATGTGTACAGTGCTGCATGTTGATGCTTTTCCTCCCTCGGCTACTTAGCGGCTTCGTTGGAGTTCAATAAGATTGTGTTCTTGTTATTTTTGGGAAAGATAAAATTCAAAAGGGAAATGCGAAACTGCATGACTAATACAACTTTTTAATTTATCAAGAAGAAAGATAAATATGTTTTAtgggaaattgatgtaaaatgaGAACTACCTAGTTAAAATGAACTTTTTTATCAAATAAATTCAGAGCTCTGTTATAATGATG

Function

NR:

description
voltage-dependent L-type calcium channel subunit beta-4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959227.1 False 4436 mRNA 0.44 14 37153568 37221890
XM_036959228.1 True 4499 mRNA 0.44 13 37168797 37221890

Neighbor

gene id symbol gene type direction distance location
LOC110501811 LOC106586394 coding upstream 7318 37120935 ~ 37146250 (+)
LOC110501808 sec22a coding upstream 183177 36949459 ~ 36970391 (+)
LOC110501807 pdia5 coding upstream 236342 36838714 ~ 36917226 (+)
LOC110501805 dirc2 coding upstream 632806 36435000 ~ 36520762 (+)
LOC110501803 LOC106582352 coding upstream 747349 36379506 ~ 36406219 (+)
LOC110501814 LOC106582344 coding downstream 771 37222661 ~ 37238631 (+)
LOC110501815 LOC100194727 coding downstream 32912 37254802 ~ 37357452 (+)
LOC110501820 LOC106582329 coding downstream 542839 37764729 ~ 37783640 (+)
LOC110501823 LOC106582327 coding downstream 567467 37789357 ~ 37790416 (+)
LOC110501825 LOC106582330 coding downstream 572119 37794009 ~ 37794948 (+)
G1805533 NA non-coding upstream 102256 36999845 ~ 37051312 (+)
G1805500 NA non-coding upstream 210219 36942061 ~ 36943349 (+)
G1805487 NA non-coding upstream 231617 36920328 ~ 36921951 (+)
G1805478 NA non-coding upstream 298359 36854582 ~ 36855209 (+)
G1805400 NA non-coding upstream 433904 36712219 ~ 36719664 (+)
G1805697 NA non-coding downstream 114087 37335977 ~ 37337154 (+)
G1805703 NA non-coding downstream 136260 37358150 ~ 37358976 (+)
G1805725 NA non-coding downstream 157785 37379675 ~ 37429633 (+)
G1805796 NA non-coding downstream 273826 37495716 ~ 37496295 (+)
G1805191 NA other upstream 789638 36363596 ~ 36363930 (+)
G1804873 NA other upstream 1278116 35874562 ~ 35875452 (+)
LOC110501795 LOC106596205 other upstream 1394142 35740427 ~ 35760519 (+)
G1800754 NA other upstream 4239386 32910793 ~ 32914182 (+)
LOC110501842 LOC106586352 other downstream 857976 38079807 ~ 38213191 (+)
G1807306 NA other downstream 1077237 38282124 ~ 38316253 (+)
G1807376 NA other downstream 1184247 38406137 ~ 38411163 (+)
G1807566 NA other downstream 1640850 38862740 ~ 38863136 (+)
G1808209 NA other downstream 1927190 39149080 ~ 39151333 (+)

Expression


Co-expression Network