LOC118943641 (LOC106582431)


Basic Information

Item Value
gene id LOC118943641
gene name LOC106582431
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43850609 ~ 43853026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959597.1
taacacagtgtccaaagaagggccagaagtatacagaatggtgtcgtctgcatagaggtggataagagactcaccagcagcaagagcgacatcattgatgtatacagagaagacaGTCGGCCTGAAAATTGAACCTTAACCTTAAAGGCTCCttaacaccttctacccccaggcaataagactgctgaacaattaatcaaatggccaccggactgttatattgacacccccccctaccgatcctcgacttcggcgatgtcatttacaaaatagcctccaatacgttactcaataaattggatgcagtctatcacagtgccatctgttttgtcactaaagccccatatactacccaccactggcCAGCTGACATGTGATGTGCCGTCGTGTCTCCTGAGGTTATGGATTATGATCCAAACTAAGCACTGACATCACACAAACCAGTTAGTCTGCACAGTTATCCTATTTCCCATGGAAAATAGCCTTtgagtgaccaaaacatcacccATACTATATTTCCCCCTTTAAAATGCTCAGTTGAGAAAATGTACCTTTTCTCTAACTATCAGTAAGGCTGAAGGACAGGCAAGGTGCGCAGAGAAACTTCCAATCCTGTCACACATTACATCATGCTTTCacaaattatttatttaaccaaccattattttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagagagagagagacactggggagggGAGTGTTTGTCAGTGAATCAGGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGCGGACCTGGCAGGGTCACACACAGGACCAAGAAGGAGCAGGACCTCAGCATTTGAACCTTTATTACAAATGGAGACACATGAAGATATTCAATACTGTTTTCAAGACGGAAACTCTTCTTGCAGAAAGGCTTTGCTGTCGACATCTATCTACATCACACTGTACATCTTCTTTTCATTGATTTCAGCAGTTACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGATTGATTGTGATACCAGTAATGACTGTAGCAATAATGGAATCGTGCTGGGGTTTTGGggaatatttctgtgtgttttatTTCTACATCAGTTGTTTATGTGCTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatGATGTGTTGTATATCAATTACCTGGTGTTGTTGTATCATATATTATGCTGCTATCATAAAAATATTTGTAAATGTACAGGTACCCAGTAAATGTTTGAAAGAATGTTTTATTGTTGAAGGAGTAACCTGGGGTATTGTAATTGACCTTTTAATTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATTTGAAAATCTTTGTCGTGGCCACATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAGTGTGTCTAGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGGAAAGCAACAAAAACTCTAGCTATTGTTGTTTTCACCTATCTAAGCTGTTGGATTCCAtttcatttgtatttaatttttattgTAATTGACAATTTATCGTCATTCATCATCAGCTTTTTGCCACTTCTTAATTCCTTAATTAATCCAATAATTTACTCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAGCGTATTTTAACTCGTTTGAAGTTAAGGCATTCATAGTTCCTATGTTTTTATTCATAAGTTTGACAAACACAGGTTAGATATAGTCATGTTATACTGCTATGTTGTAACTGCCTCATTCATGTAACAATACGCTGATATTACTTATCTCTGTGTTGTCATAATAGATGTGATACATGTGATGTTGATAGAGAATGATTTGACTGGATTGGCAAGGAATGACTTGGAGAAGGCATAAGAGGGCATTAGCTTGTTTTGTTAAAGACATTGTAATAAATTTGGGGTGTATATTCCAAATGCCAAAGTCTCTGGTTGATGCATGTTATTTAATGAAAAACGGTATGTAAGATTTCTGAAAGTACATTTTGAGGACGTCATGGATCATTCCATACGTTCTTTAACATCACCCTCTAGTAAGTCAtataattgagtgtagtctggcccaggaatgTGAAAGTGAATGGAAAGGATCTgtagcaacaaaccgcccttgctgtctctgcctggcccgttgcactctctccactgggattctcttccTCTAACCCATTACAGGGGCTGGGTCACTGGCTTACTGTTGCTCTTCCATgcagtccctaggagggg

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959597.1 True 2418 mRNA 0.40 1 43850609 43853026

Neighbor

gene id symbol gene type direction distance location
LOC110502162 LOC106582482 coding upstream 206693 43641312 ~ 43643916 (+)
LOC118943639 LOC106582449 coding upstream 222717 43626441 ~ 43627892 (+)
LOC110501909 LOC106582448 coding upstream 277662 43550472 ~ 43572947 (+)
LOC110501907 LOC106582447 coding upstream 300674 43501793 ~ 43549935 (+)
LOC110501906 LOC106582445 coding upstream 363846 43346803 ~ 43486763 (+)
LOC118943642 LOC106582432 coding downstream 54633 43907659 ~ 43908820 (+)
LOC110501910 LOC106582449 coding downstream 117372 43970398 ~ 43971412 (+)
LOC118943610 LOC106576908 coding downstream 122989 43976015 ~ 43979227 (+)
LOC110502167 LOC106582449 coding downstream 139212 43992238 ~ 43995375 (+)
LOC110502168 LOC106582452 coding downstream 171249 44024275 ~ 44145882 (+)
G1813332 NA non-coding upstream 114876 43724577 ~ 43735733 (+)
G1813302 NA non-coding upstream 186926 43663195 ~ 43663683 (+)
G1813258 LOC106582449 non-coding upstream 193474 43586693 ~ 43657135 (+)
G1813419 NA non-coding downstream 114857 43967883 ~ 44005825 (+)
G1813439 NA non-coding downstream 162229 44015255 ~ 44015582 (+)
G1813475 NA non-coding downstream 225923 44078949 ~ 44087437 (+)
G1813481 NA non-coding downstream 278668 44131694 ~ 44132872 (+)
G1812953 NA other upstream 700225 43149762 ~ 43150384 (+)
LOC110502157 LOC106582435 other upstream 1114742 42688215 ~ 42735867 (+)
G1812428 NA other upstream 1126495 42723672 ~ 42724114 (+)
LOC110501889 LOC106582433 other upstream 1461322 42256417 ~ 42389468 (+)
G1810740 NA other upstream 2384260 41464478 ~ 41466349 (+)
G1813442 NA other downstream 255218 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 465132 44148629 ~ 44324651 (+)
G1813588 ino80d other downstream 509635 44362661 ~ 44371923 (+)
G1813665 LOC106582464 other downstream 645431 44498457 ~ 44508051 (+)
LOC110501918 LOC106582467 other downstream 713862 44566863 ~ 44573921 (+)

Expression


Co-expression Network