LOC110501931 (lnpa)


Basic Information

Item Value
gene id LOC110501931
gene name lnpa
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44944427 ~ 45022170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959408.1
ttttaagaaaataaattgtaaaaaataatcgGGGTATATGACTTTGTGTCTGTGGTAACTCGTTGCCACGCCTCTTCGCCTCCTAATATAACCAACATAGAGGAAATGTTGTTTCTGTATGAGAGAGGATCTTCGGACTAAAATACTGTCCAGGTGGCGAGATCTTCCACTGAGGCACTTGACAAATCAGAGGGGTGTAAAAATACCCACTTTATTCGGACCTCAATATGGGGGTATTAATATCCCGGTTTAGGACAAAGCCCTCCACTGTAGAGGTTTTGGAAGGAATTGATAAGGATATACAGACTGGTGAGGAATGTAGAGAACTGTATCAAAGACAGTTGAAGCAATGGCTATGGAGACTACTGCTGTACTCATCTCTTCTCTACCTGATGGCCAGCATAATTGTGTATCTCTGGTACCTCCCTGAACAGATGATTGGGAAGGTCATATTGGCCCTTCCGTATGTGATATTTCCACTATTTGTATGGCTCCTTCGAAAGGGGCTGATTGCTCTTTTTAACAGAAGAACGGAAAAAAACAatgAAAAATTGGACGATCTCAAATCACAAAAACGAAAAATTctgtTAGAGGTGATGGAAACTGAAACctataaaactgcaaaaatgATTCTGGAGAGATTTGATCCTGACTCAAAAGCGAAGGTGCCAGAATCCCTTCCAAATGAAATGCCTATGACTCCAAAACCTCACCAGGAACTCCGTCAGCGTCATGTCACTCCTCGTCCCCCGGTGGCGGTGACTCCTGCCGCAGCCCGTCCTCCTCGTCCCCCGGTGGCGGTGACTCCTGCCGcagccagtcttcttctggcccCAGGGGCCACCCATGCAGGGCCACCCCTCCACTCTGCTCCTGGAGGACCCCCAGAGAGGATCCTGTCTGAGGCTGCTCAGCAGAGCTTGACGAAGAGGCCCATGACCCCTGGCACCCTTGTTCCAGGAGTGGgCCCTCCCCTGGCCAGACCTGTCCTCCCCAGGGATCGCGGCGCCATGGACAGGGTTATTGAGTACCTTGTCGGCGATGGCCCTCAGAATAGATATGCCCTCATATGTCAGCAGTGTCTCACCCATAACGGCATGGCATTAAAAGAGGAATTTGAATATATTGCCTTTAGATGTGCATATTGTTGTTTCCTGAACCCTGCGAGAAAGGCCAGACCCCAAGCCCCCCGACTCCCTGAGATCAGTGCCGAGACGAAGATCCTCACCGACGCAACACCACCTGAAGCCGATGAGAGCCCCGTTGCTGCAGTTGAGGAGAAATGGCCTTCTCCCCCAGCTGTAGAGGAGATCCAGGAGTTGACAGTTACTCCAACAGAGAGTGCCCCTGAAACAAAAGGGTCAGAAACCCCAGGCTGTCTGCGAGCCACCACAGAGAAGTCCGATGGAGAACTAGATATGTCCGATATGGAGGTTCAATAGAATGTTGTTTCAACATCATTTTAGGCTGGAGCTATATTCTTTTTTTAGTTATTTTTCTTAGTTTTTAAAAGATAACTTAATAACATCAATGCTGTGAGTAAGAATCGTAGAATGACAGGCTAAGGTTTTGGTATGAACTTAAATAAATACCTTTTTTTTCCCTGTCTGTTATAGTGATAGCATATAAACTGAATCCTGATGGTAGGGGATAATGGACAGGCAATACTCTTGGGATTTGACGCGATGTCAATACTTTCATTCACTGTTCCAGCACTTCCATCCATGAAGCAAAGAGTAGGTCTGCTAGCTAAGCGTTTGCCGTTGATGCACAGCTGTAGAATGTTTATATATATTATTTCTTTTCCTTTTTAGTGTTTTAAATATTAAGCGGCTAAGCAATTTGCCACATGACTATATTGTCTGTTTTGTGTGACGATGTCTGTCCATGTTGTCTACAGACAGGTAAACATGCTAATGCATGCTAGTActacttaataataataataataataataatgcagaggccAAATGTAGCTAAGCAGTTGGTTTGTAGAATGACGTTTTCTTCCGTTTGTTTTGCGCGAGTTATTTGCTGCATTGTCACTGtatttttgttagtttttttttgtttgttgagaaTGTCTGGCCATGTTTACAGAAATGCAAAAAAATATCCTGTCCGGTGTTCTATGAAATCTGTATATTTATAGGTGATGATATTTCTAGATACTACAGTATTGGGATACAGTGCCCTTTTGATCAGTATTGAATAGGTTTTTGGATACTTCAAGCACCATGTGGCTAACCACATGTTTACACAGTAATGGTACTATCAGGAGTGCTTAGTTACATATGTATTGCTTAATAGGAGAAAgatgttctgctctactctgcatCCGAGTGCATTTATACTTTGAAATAAATAAAGTCAATTTCAGTAAGCTG
>XM_036959409.1
ttttaagaaaataaattgtaaaaaataatcgGGGTATATGACTTTGTGTCTGTGGTAACTCGTTGCCACGCCTCTTCGCCTCCTAATATAACCAACATAGAGGAAATGTTGTTTCTGTATGAGAGAGGATCTTCGGACTAAAATACTGTCCAGGTGGCGAGATCTTCCACTGAGGCACTTGACAAATCAGAGGGGTGTAAAAATACCCACTTTATTCGGACCTCAATATGGGGGTATTAATATCCCGGTTTAGGACAAAGCCCTCCACTGTAGAGGTTTTGGAAGGAATTGATAAGGATATACAGACTGGTGAGGAATGTAGAGAACTGTATCAAAGACAGTTGAAGCAATGGCTATGGAGACTACTGCTGTACTCATCTCTTCTCTACCTGATGGCCAGCATAATTGTGTATCTCTGGTACCTCCCTGAACAGATGATTGGGAAGGTCATATTGGCCCTTCCGTATGTGATATTTCCACTATTTGTATGGCTCCTTCGAAAGGGGCTGATTGCTCTTTTTAACAGAAGAACGGAAAAAAACAatgAAAAATTGGACGATCTCAAATCACAAAAACGAAAAATTctgtTAGAGGTGATGGAAACTGAAACctataaaactgcaaaaatgATTCTGGAGAGATTTGATCCTGACTCAAAAGCGAAGGTGCCAGAATCCCTTCCAAATGAAATGCCTATGACTCCAAAACCTCACCAGGAACTCCGTCAGCGTCATGTCACTCCTCGTCCCCCGGTGGCGGTGACTCCTGCCGCAGCCCGTCCTCCTCGTCCCCCGGTGGCGGTGACTCCTGCCGcagccagtcttcttctggcccCAGGGGCCACCCATGCAGGGCCACCCCTCCACTCTGCTCCTGGAGGACCCCCAGAGAGGATCCTGTCTGAGGCTGCTCAGCAGAGCTTGACGAAGAGGCCCATGACCCCTGGCACCCTTGTTCCAGGAGTGGgCCCTCCCCTGGCCAGACCTGTCCTCCCCAGGGATCGCGGCGCCATGGACAGGGTTATTGAGTACCTTGTCGGCGATGGCCCTCAGAATAGATATGCCCTCATATGTCAGCAGTGTCTCACCCATAACGGCATGGCATTAAAAGAGGAATTTGAATATATTGCCTTTAGATGTGCATATTGTTGTTTCCTGAACCCTGCGAGAAAGGCCAGACCCCAAGCCCCCCGACTCCCTGAGATCAGTGCCGAGACGAAGATCCTCACCGACGCAACACCACCTGAAGCCGATGAGAGCCCCGTTGCTGCAGCTGTAGAGGAGATCCAGGAGTTGACAGTTACTCCAACAGAGAGTGCCCCTGAAACAAAAGGGTCAGAAACCCCAGGCTGTCTGCGAGCCACCACAGAGAAGTCCGATGGAGAACTAGATATGTCCGATATGGAGGTTCAATAGAATGTTGTTTCAACATCATTTTAGGCTGGAGCTATATTCTTTTTTTAGTTATTTTTCTTAGTTTTTAAAAGATAACTTAATAACATCAATGCTGTGAGTAAGAATCGTAGAATGACAGGCTAAGGTTTTGGTATGAACTTAAATAAATACCTTTTTTTTCCCTGTCTGTTATAGTGATAGCATATAAACTGAATCCTGATGGTAGGGGATAATGGACAGGCAATACTCTTGGGATTTGACGCGATGTCAATACTTTCATTCACTGTTCCAGCACTTCCATCCATGAAGCAAAGAGTAGGTCTGCTAGCTAAGCGTTTGCCGTTGATGCACAGCTGTAGAATGTTTATATATATTATTTCTTTTCCTTTTTAGTGTTTTAAATATTAAGCGGCTAAGCAATTTGCCACATGACTATATTGTCTGTTTTGTGTGACGATGTCTGTCCATGTTGTCTACAGACAGGTAAACATGCTAATGCATGCTAGTActacttaataataataataataataataatgcagaggccAAATGTAGCTAAGCAGTTGGTTTGTAGAATGACGTTTTCTTCCGTTTGTTTTGCGCGAGTTATTTGCTGCATTGTCACTGtatttttgttagtttttttttgtttgttgagaaTGTCTGGCCATGTTTACAGAAATGCAAAAAAATATCCTGTCCGGTGTTCTATGAAATCTGTATATTTATAGGTGATGATATTTCTAGATACTACAGTATTGGGATACAGTGCCCTTTTGATCAGTATTGAATAGGTTTTTGGATACTTCAAGCACCATGTGGCTAACCACATGTTTACACAGTAATGGTACTATCAGGAGTGCTTAGTTACATATGTATTGCTTAATAGGAGAAAgatgttctgctctactctgcatCCGAGTGCATTTATACTTTGAAATAAATAAAGTCAATTTCAGTAAGCTG
>TU2076065
taataataatattaataataataataataataataatgcagaggccAAATGTAGCTAAGCAGTTGGTTTGTAGAATGACGTTTTCTTCCGTTTGTTTTGCGCGAGTTATTTGCTGCATTGTCACTGtatttttgttagtttttttttgtttgttgagaaTGTCTGGCCATGTTTACAGAAATGCAAAAAAATATCCTGTCCGGTGTTCTATGAAATCTGTATATTTATAGGTGATGATATTTCTAGATACTACAGTATTGGGATACAGTGCCCTTTTGATCAGTATTGAATAGGTTTTTGGATACTTCAAGCACCATGTGGCTAACCACATGTTTACACAGTAATGGTACTATCAGGAGTGCTTAGTTACATATGTATTGCTTAATAGGAGAAAgatgttctgctctactctgcatCCGAGTGCATTTATACTTTGAAATAAATAAAG
>TU2076064
tatatatatatatttTTTTCCTTTTTAGTGTTTTAAATATTAAGCGGCTAAGCAATTTGCCACATGACTATATTGTCTGTTTTGTGTGACGATGTCTGTCCATGTTGTCTACAGACAGGTAAACATGCTAATGCATGCTAGTActacttaataataataataataataataatgcagaggccAAATGTAGCTAAGCAGTTGGTTTGTAGAATGACGTTTTCTTCCGTTTGTTTTGCGCGAGTTATTTGCTGCATTGTCACTGtatttttgttagtttttttttgtttgttgagaaTGTCTGGCCATGTTTACAGAAATGCAAAAAAATATCCTGTCCGGTGTTCTATGAAATCTGTATATTTATAGGTGATGATATTTCTAGATACTACAGTATTGGGATACAGTGCCCTTTTGATCAGTATTGAATAGGTTTTTGGATACTTCAAGCACCATGTGGCTAACCACATGTTTACACAGTAATGGTACTATCAGGAGTGCTTAGTTACATATGTATTGCTTAATAGGAGAAAgatgttctgctctactctgcatCCGAGTGCATTTATACTTTGAAATAAATAAAG
>TU2076070
CGTATGTGCGGCGTCTGACGTCAAAAAGCGGGTTGCTGTttcgtaaaaaaaataatttaaactttttggtcttcatttaagGTGGCGAGATCTTCCACTGAGGCACTTGACAAATCAGAGGGGTGTAAAAATACCCACTTTATTCGGACCTCAATATGGGGGTATTAATATCCCGGTTTAGGGTATGTATTGCATAACTTGTTCATTTTAGTGGTCCTGTATGgttgttggtagagcatggtgggTTTTATTCCTGGGGCCACCCATACCTAAACTGTATgcaccagtgtttcccctagaaaaacatttatgcagcattagCAAAGTTAGGGTGTGGACAATGGCATGGTTTTTAAATGGAACAAAATATAAATGagctg
>TU2076063
ACGCCTCTTCGCCTCCTAATATAACCAACATAGAGGAAATGTTGTTTCTGTATGAGAGAGGATCTTCGGACTAAAATACTGTCCAGGATATACAGACTGGTGAGGAATGTAGAGAACTGTATCAAAGACAGTTGAAGCAATGGCTATGGAGACTACTGCTGTACTCATCTCTTCTCTACCTGATGGCCAGCATAATTGTGTATCTCTGGTACCTCCCTGAACAGATGATTGGGAAGGTCATATTGGCCCTTCCGTATGTGATATTTCCACTATTTGTATGGCTCCTTCGAAAGGGGCTGATTGCTCTTTTTAACAGAAGAACGGAAAAAAACAatgAAAAATTGGACGATCTCAAATCACAAAAACGAAAAATTctgtTAGAGGTGATGGAAACTGAAACctataaaactgcaaaaatgATTCTGGAGAGATTTGATCCTGACTCAAAAGCGAAGGTGCCAGAATCCCTTCCAAATGAAATGCCTATGACTCCAAAACCTCACCGACGCAACACCACCTGAAGCCGATGAGAGCCCCGTTGCTGCAGCTGTAGAGGAGATCCAGGAGTTGACAGTTACTCCAACAGAGAGTGCCCCTGAAACAAAAGGGTCAGAAACCCCAGGCTGTCTGCGAGCCACCACAGAGAAGTCCGATGGAGAACTAGATATGTCCGATATGGAGGTTCAATAGAATGTTGTTTCAACATCATTTTAGGCTGGAGCTATATTCTTTTTTTAGTTATTTTTCTTAGTTTTTAAAAGATAACTTAATAACATCAATGCTGTGAGTAAGAATCGTAGAATGACAGGCTAAGGTTTTGGTATGAACTTAAATAAATACCTTTTTTTTCCCTGTCTGTTATAGTGATAGCATATAAACTGAATCCTGATGGTAGGGGATAATGGACAGGCAATACTCTTGGGATTTGACGCGATGTCAATACTTTCATTCACTGTTCCAGCACTTCCATCCATGAAGCAAAGAGTAGGTCTGCTAGCTAAGCGTTTGCCGTTGATGCACAGCTGTAGAATGTTTATATATATTATTTCTTTTCCTTTTTAGTGTTTTAAATATTAAGCGGCTAAGCAATTTGCCACATGACTATATTGTCTGTTTTGTGTGACGATGTCTGTCCATGTTGTCTACAGACAGGTAAACATGCTAATGCATGCTAGTActacttaataataataataataataataatgcagaggccAAATGTAGCTAAGCAGTTGGTTTGTAGAATGACGTTTTCTTCCGTTTGTTTTGCGCGAGTTATTTGCTGCATTGTCACTGtatttttgttagtttttttttgtttgttgagaaTGTCTGGCCATGTTTACAGAAATGCAAAAAAATATCCTGTCCGGTGTTCTATGAAATCTGTATATTTATAGGTGATGATATTTCTAGATACTACAGTATTGGGATACAGTGCCCTTTTGATCAGTATTGAATAGGTTTTTGGATACTTCAAGCACCATGTGGCTAACCACATGTTTACACAGTAATGGTACTATCAGGAGTGCTTAGTTACATATGTATTGCTTAATAGGAGAAAgatgttctgctctactctgcatCCGAGTGCATTTATACTTTGAAATAAATAAAG

Function

symbol description
lnpa Predicted to enable identical protein binding activity. Predicted to be involved in endoplasmic reticulum tubular network maintenance and positive regulation of endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum tubular network membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in mesenchyme pectoral fin. Orthologous to human LNPK (lunapark, ER junction formation factor).

NR:

description
protein lunapark-A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959408.1 False 2387 mRNA 0.44 13 45009747 45022170
XM_036959409.1 False 2360 mRNA 0.43 13 45009747 45022170
TU2076065 False 448 lncRNA 0.33 2 44944427 45022153
TU2076064 False 584 lncRNA 0.33 2 45009405 45022153
TU2076070 False 380 lncRNA 0.41 2 45009612 45011090
TU2076063 True 1618 lncRNA 0.39 8 45009814 45022153

Neighbor

gene id symbol gene type direction distance location
LOC110502137 LOC106582494 coding upstream 21903 44983911 ~ 44987844 (+)
LOC110501922 nf2l2 coding upstream 351178 44647142 ~ 44658569 (+)
LOC110501918 LOC106582467 coding upstream 435829 44566863 ~ 44573921 (+)
LOC110501916 LOC106582463 coding upstream 536879 44468192 ~ 44472868 (+)
LOC110502170 LOC106582462 coding upstream 546730 44452252 ~ 44463017 (+)
LOC110501942 atp5g2 coding downstream 150721 45172891 ~ 45175477 (+)
LOC110501941 LOC106582491 coding downstream 153725 45175895 ~ 45251964 (+)
LOC118943613 LOC106582482 coding downstream 228612 45250782 ~ 45252926 (+)
LOC110502139 LOC106599004 coding downstream 240045 45262215 ~ 45267589 (+)
LOC110502173 LOC106582449 coding downstream 304939 45327109 ~ 45329041 (+)
G1814713 hoxd11 non-coding upstream 46233 44953926 ~ 44963514 (+)
G1814689 NA non-coding upstream 85703 44923763 ~ 44924044 (+)
G1814687 NA non-coding upstream 89338 44920179 ~ 44920409 (+)
G1814686 hoxd3ab non-coding upstream 89716 44919509 ~ 44920031 (+)
G1814685 hoxd3ab non-coding upstream 90459 44917549 ~ 44919288 (+)
G1814704 NA non-coding downstream 1288 45023458 ~ 45024584 (+)
G1814769 NA non-coding downstream 21194 45043364 ~ 45043650 (+)
G1814777 NA non-coding downstream 33029 45055199 ~ 45055412 (+)
G1814788 NA non-coding downstream 52372 45074542 ~ 45074833 (+)
G1814790 NA non-coding downstream 54649 45076819 ~ 45077038 (+)
G1813665 LOC106582464 other upstream 501696 44498457 ~ 44508051 (+)
G1813588 ino80d other upstream 637824 44362661 ~ 44371923 (+)
LOC110502169 LOC106582455 other upstream 689636 44148629 ~ 44324651 (+)
G1813442 NA other upstream 898880 44108244 ~ 44110867 (+)
G1814811 NA other downstream 88377 45110547 ~ 45111229 (+)
LOC110502177 LOC106582482 other downstream 499750 45521920 ~ 45527893 (+)
G1815113 LOC106582487 other downstream 702977 45725039 ~ 45726328 (+)
G1815137 NA other downstream 759329 45781499 ~ 45782536 (+)
LOC110501915 LOC106582460 coding upstream 505774 44381552 ~ 44438653 (+)
G1814683 NA non-coding upstream 28488 44915714 ~ 44915939 (+)

Expression


Co-expression Network