RNA id: XM_036959408.1


Basic Information

Item Value
RNA id XM_036959408.1
length 2387
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC110501931
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44944427 ~ 45022170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttaagaaaataaattgtaaaaaataatcgGGGTATATGACTTTGTGTCTGTGGTAACTCGTTGCCACGCCTCTTCGCCTCCTAATATAACCAACATAGAGGAAATGTTGTTTCTGTATGAGAGAGGATCTTCGGACTAAAATACTGTCCAGGTGGCGAGATCTTCCACTGAGGCACTTGACAAATCAGAGGGGTGTAAAAATACCCACTTTATTCGGACCTCAATATGGGGGTATTAATATCCCGGTTTAGGACAAAGCCCTCCACTGTAGAGGTTTTGGAAGGAATTGATAAGGATATACAGACTGGTGAGGAATGTAGAGAACTGTATCAAAGACAGTTGAAGCAATGGCTATGGAGACTACTGCTGTACTCATCTCTTCTCTACCTGATGGCCAGCATAATTGTGTATCTCTGGTACCTCCCTGAACAGATGATTGGGAAGGTCATATTGGCCCTTCCGTATGTGATATTTCCACTATTTGTATGGCTCCTTCGAAAGGGGCTGATTGCTCTTTTTAACAGAAGAACGGAAAAAAACAatgAAAAATTGGACGATCTCAAATCACAAAAACGAAAAATTctgtTAGAGGTGATGGAAACTGAAACctataaaactgcaaaaatgATTCTGGAGAGATTTGATCCTGACTCAAAAGCGAAGGTGCCAGAATCCCTTCCAAATGAAATGCCTATGACTCCAAAACCTCACCAGGAACTCCGTCAGCGTCATGTCACTCCTCGTCCCCCGGTGGCGGTGACTCCTGCCGCAGCCCGTCCTCCTCGTCCCCCGGTGGCGGTGACTCCTGCCGcagccagtcttcttctggcccCAGGGGCCACCCATGCAGGGCCACCCCTCCACTCTGCTCCTGGAGGACCCCCAGAGAGGATCCTGTCTGAGGCTGCTCAGCAGAGCTTGACGAAGAGGCCCATGACCCCTGGCACCCTTGTTCCAGGAGTGGgCCCTCCCCTGGCCAGACCTGTCCTCCCCAGGGATCGCGGCGCCATGGACAGGGTTATTGAGTACCTTGTCGGCGATGGCCCTCAGAATAGATATGCCCTCATATGTCAGCAGTGTCTCACCCATAACGGCATGGCATTAAAAGAGGAATTTGAATATATTGCCTTTAGATGTGCATATTGTTGTTTCCTGAACCCTGCGAGAAAGGCCAGACCCCAAGCCCCCCGACTCCCTGAGATCAGTGCCGAGACGAAGATCCTCACCGACGCAACACCACCTGAAGCCGATGAGAGCCCCGTTGCTGCAGTTGAGGAGAAATGGCCTTCTCCCCCAGCTGTAGAGGAGATCCAGGAGTTGACAGTTACTCCAACAGAGAGTGCCCCTGAAACAAAAGGGTCAGAAACCCCAGGCTGTCTGCGAGCCACCACAGAGAAGTCCGATGGAGAACTAGATATGTCCGATATGGAGGTTCAATAGAATGTTGTTTCAACATCATTTTAGGCTGGAGCTATATTCTTTTTTTAGTTATTTTTCTTAGTTTTTAAAAGATAACTTAATAACATCAATGCTGTGAGTAAGAATCGTAGAATGACAGGCTAAGGTTTTGGTATGAACTTAAATAAATACCTTTTTTTTCCCTGTCTGTTATAGTGATAGCATATAAACTGAATCCTGATGGTAGGGGATAATGGACAGGCAATACTCTTGGGATTTGACGCGATGTCAATACTTTCATTCACTGTTCCAGCACTTCCATCCATGAAGCAAAGAGTAGGTCTGCTAGCTAAGCGTTTGCCGTTGATGCACAGCTGTAGAATGTTTATATATATTATTTCTTTTCCTTTTTAGTGTTTTAAATATTAAGCGGCTAAGCAATTTGCCACATGACTATATTGTCTGTTTTGTGTGACGATGTCTGTCCATGTTGTCTACAGACAGGTAAACATGCTAATGCATGCTAGTActacttaataataataataataataataatgcagaggccAAATGTAGCTAAGCAGTTGGTTTGTAGAATGACGTTTTCTTCCGTTTGTTTTGCGCGAGTTATTTGCTGCATTGTCACTGtatttttgttagtttttttttgtttgttgagaaTGTCTGGCCATGTTTACAGAAATGCAAAAAAATATCCTGTCCGGTGTTCTATGAAATCTGTATATTTATAGGTGATGATATTTCTAGATACTACAGTATTGGGATACAGTGCCCTTTTGATCAGTATTGAATAGGTTTTTGGATACTTCAAGCACCATGTGGCTAACCACATGTTTACACAGTAATGGTACTATCAGGAGTGCTTAGTTACATATGTATTGCTTAATAGGAGAAAgatgttctgctctactctgcatCCGAGTGCATTTATACTTTGAAATAAATAAAGTCAATTTCAGTAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076077 lncRNA upstream 46233 44953926 ~ 44963514 (+) True G1814713
TU2076049 lncRNA upstream 85703 44923763 ~ 44924044 (+) True G1814689
TU2076047 lncRNA upstream 89338 44920179 ~ 44920409 (+) True G1814687
TU2076046 lncRNA upstream 89716 44919509 ~ 44920031 (+) True G1814686
TU2076045 lncRNA upstream 90459 44917549 ~ 44919288 (+) True G1814685
TU2076066 lncRNA downstream 1288 45023458 ~ 45024584 (+) True G1814704
TU2076136 lncRNA downstream 21194 45043364 ~ 45043650 (+) True G1814769
TU2076144 lncRNA downstream 33029 45055199 ~ 45055412 (+) True G1814777
TU2076155 lncRNA downstream 52372 45074542 ~ 45074833 (+) True G1814788
TU2076157 lncRNA downstream 54649 45076819 ~ 45077038 (+) True G1814790
XM_021580002.2 mRNA upstream 21903 44983911 ~ 44987844 (+) True LOC110502137
XM_021579795.2 mRNA upstream 351178 44647142 ~ 44658569 (+) False LOC110501922
XM_036959401.1 mRNA upstream 351178 44647146 ~ 44658569 (+) False LOC110501922
XM_036959402.1 mRNA upstream 351178 44654045 ~ 44658569 (+) True LOC110501922
XM_021579792.2 mRNA upstream 435829 44566863 ~ 44573918 (+) False LOC110501918
XM_021579820.2 mRNA downstream 150721 45172891 ~ 45175477 (+) False LOC110501942
XM_021579822.2 mRNA downstream 150823 45172993 ~ 45175477 (+) False LOC110501942
XM_036959411.1 mRNA downstream 153725 45175895 ~ 45251964 (+) False LOC110501941
XM_036959410.1 mRNA downstream 228612 45250782 ~ 45252926 (+) True LOC118943613
XM_036959413.1 mRNA downstream 240045 45262215 ~ 45267589 (+) True LOC110502139
TU2074893 other upstream 435826 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 501696 44498457 ~ 44508051 (+) True G1813665
TU2074792 other upstream 637824 44362661 ~ 44371923 (+) True G1813588
TU2074675 other upstream 689636 44318158 ~ 44320111 (+) True LOC110502169
TU2074609 other upstream 898880 44109320 ~ 44110867 (+) True G1813442
TU2076178 other downstream 88377 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 150805 45172975 ~ 45175472 (+) True LOC110501942
TU2076385 other downstream 499750 45521920 ~ 45527440 (+) True LOC110502177
TU2076542 other downstream 702977 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 759329 45781499 ~ 45782536 (+) True G1815137

Expression Profile