RNA id: XM_021579792.2



Basic Information


Item Value
RNA id XM_021579792.2
length 1065
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110501918
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44566863 ~ 44573921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGatgacataaaaaaaatattctggaGGGAAGAAAAAGGAACTTGGTCGCAATACTATTAGATCCAGTGAGTCGGCTACCGGCAAGGGGGAAAGCGGATTGGATTGGAACTGAAGCACACAAAAAAAGCTCTGAAGTTGGAACAACTGTAAAGAATATAGTTTATTTGAACAGGAAACATGGGTGACATTGAAAAGGGGAAAAAGGCTTTTGTTCAGAAGTGTGCCCAGTGCCATACTGTTGAAAATGGAGGGAAGCACAAGGTCGGGCCAAACCTCTGGGGTCTGTTTGGACGCAAGACCGGACAGGCGGAAGGCTTTTCCTACACGGATGCCAACAAAGCCAAAGGCATTGTCTGGGATACCGATACCCTCATGACTTACTTGGAGAACCCCAAGAAATACATTCCAGGAACAAAGATGATCTTTGCTGGCATCAAGAAGAAGGGAGAGCGTGCAGATCTCATAGCATATTTGAAGTCTGCAACTTCCTAGACTAATGTCTACATTTTGTtcaatattaatattattattatttttttgtcttcgagaaatatcaactgttcagagaagggGGATCTTTTCAAGAAGCTTAGACTTGTATTCTTAATCAGTTATGTCTGGTGATTGTTGTGGCTTTCAATAGCCTGCATGACATAACTGCTGGGACTCTGAATGGCGTTTGCATGATCAGTTGCCATATTGATCACGGCTGTATCTTTGTCTTTGTTTCTCCATCTTGATGGCGTATATTCTATCCCCTGGTTTAACAGGTGCTAATATACATCAATTATTGAGCCATAGACTAAGGGTTCCAGAATGTATTGAGTCAAAGCTGTGTGACTATATGctttgaaaacaacaacaaaaaaatggtcTAAATTACATTATGGCTACTGGTTTTAATACTTGCATGGCTAATGCAAACGGTCAATCAGATTTGGAAGAGTTTGTACATTTCAACGGGTTACCTTGAAAGTGATCCCTGGCAATATCTTCATGTTGCTACTACTTCATGTATTTTATGTAGGTTTGTTAATTTAATAAATTACATGCTAAACAAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2074917 lncRNA upstream 25183 44541015 ~ 44541680 (+) True G1813695
TU2074839 lncRNA upstream 45363 44473687 ~ 44521500 (+) True G1813624
TU2074900 lncRNA upstream 46274 44520062 ~ 44520589 (+) True G1813679
TU2074889 lncRNA upstream 56488 44509411 ~ 44510375 (+) True G1813669
TU2074882 lncRNA upstream 70287 44495892 ~ 44496576 (+) True G1813664
TU2074979 lncRNA downstream 86170 44660088 ~ 44660498 (+) True G1813749
TU2074982 lncRNA downstream 102029 44675947 ~ 44676167 (+) True G1813752
TU2074984 lncRNA downstream 105617 44679535 ~ 44679832 (+) True G1813754
TU2074989 lncRNA downstream 115410 44689328 ~ 44689591 (+) True G1813759
TU2075838 lncRNA downstream 137196 44711114 ~ 44711318 (+) True G1814493
XM_021579789.2 mRNA upstream 93995 44468192 ~ 44472868 (+) True LOC110501916
XM_021579790.2 mRNA upstream 96653 44468192 ~ 44470210 (+) False LOC110501916
XM_036959390.1 mRNA upstream 103846 44452276 ~ 44463017 (+) False LOC110502170
XM_036959389.1 mRNA upstream 103846 44452312 ~ 44463017 (+) False LOC110502170
XM_036959391.1 mRNA upstream 103846 44452313 ~ 44463017 (+) True LOC110502170
XM_021579795.2 mRNA downstream 73224 44647142 ~ 44658569 (+) False LOC110501922
XM_036959401.1 mRNA downstream 73228 44647146 ~ 44658569 (+) False LOC110501922
XM_036959402.1 mRNA downstream 80127 44654045 ~ 44658569 (+) True LOC110501922
XM_021580002.2 mRNA downstream 409993 44983911 ~ 44987844 (+) True LOC110502137
XM_036959408.1 mRNA downstream 435829 45009747 ~ 45022170 (+) False LOC110501931
TU2074885 other upstream 58812 44498457 ~ 44508051 (+) True G1813665
TU2074792 other upstream 194940 44362661 ~ 44371923 (+) True G1813588
TU2074675 other upstream 246752 44318158 ~ 44320111 (+) True LOC110502169
TU2074604 other upstream 455996 44109320 ~ 44110867 (+) False G1813442
TU2076178 other downstream 536629 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 599057 45172975 ~ 45175472 (+) True LOC110501942
TU2076385 other downstream 948002 45521920 ~ 45527440 (+) True LOC110502177
TU2076542 other downstream 1151229 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 1207581 45781499 ~ 45782536 (+) True G1815137

Expression Profile