RNA id: XM_021580002.2


Basic Information

Item Value
RNA id XM_021580002.2
length 2843
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110502137
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44983911 ~ 44987844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggagaggagaaaaaaagagaTGATTCTGATGGAGAGAGGTCTACACAGTCCCGTGTCTGGCAAAAGGCTCTCAAACCTGTCAGACTCGGCTGGAAATTCAGTGTTGGAGGCCCTTGAAAATGCTCAGCACAGTGATCGACTAAACCCGACAATAACTTCCGCCTCGCTTCATGGAAGTCTCGGGGATATTCCAAACAAAGGCAAGTTCGAAACGGACAGACTTTTCGGTGCCCACCACAACAGCGAGAATAACTCCTCAGCGGAGATTTCCTTGTCAGAAAGCAGAAAAAAAATCCGCTTGTACCCTGAAGTTTCTCAAGACTCAGACATGAACAGTGATGTGGAAGTGGGATGCCCATCGTATCGTTCCCCGAGCCAACACaaggaaaacaacaacaaagGTTTTTCTGACAATAATTCTGGAGGCTCCAACACAAATTCATCCTCCCTTTCCAATCTTAACGGCAATGGAATGTGTTCAAACATGTCAAATGCGGATCAGGTGAGAAGGTACCGGACTGCATTTACCAGAGAACAAATAGGAAGACTGGAGAAAGAGTTTTACAGGGAAAATTACGTCTCAAGACCAAGAAGATGTGAACTTGCCGCATCACTCAATCTACCTGAAACTACAATAAAGGTATGGTTCCAGAACAGGCGGATGAAGGACAAGAGGCAACGTTTGGCAATGTCTTGGCCCCATCCAGCAGATCCAAGCTTTTACACCTACATGATGACGCACGCGGCAGCCACCGGAAGTCTACCGTACCCTTTCCATTCCCACATACCTCTGCACTATTACCCGCATGTGGGTGTCACAGCAGCTGCCGCTGCCGCTGCCGCAGCTGCGTCTGGTGCTGCAGCGTCACCTTTCACTACCTCCATTCGCCCTCTCGATACTTTCCGTGCACTCTCCCATCCTTATTCACGCCCAGAGCTTCTCTGTGGCTTCAGGCACCCAGGACTTTATCAGTCACCCTCAGGCCTCAATAGCTCTGCGGCAGCATCAGCAGCAGCGGCTGCAGCATGTGCAGCTGCGGTCAGCGCACCATCGGTCACTGGGCCATGCTCGTGCCTCAGTTGTCACAGCAGCCAGGCGGCCAGCGCGCTAGGCTCCAGAAGTACCAACACTGACTTCAACTGCACCGCATCCGGGCAAAGGTCCGAAAGTGGATTTTTTCCGTATTCTGCCGCTGTCCTGAGCAAAACGTCGGCTCCATCACCAGATCAGAGAGAGGAATCTTCACTAAACAGATAACTTCATCGTGTGGAAGATCTAAATCAAGTGCAGTTGGTTCTGTTTTCTGCTTTGCTATTAGTTTATACATAGGCCTACATCTACGACTCCAATATTTGGAGGACAAATAAAGGTAATTTCAAAACAATTAGCATAATtcgctttttttttttaaagaagccaAAAGGTGTTAACATTGGTAAGTGCTAAATTGACAGTAATTTAACGGACTATTTTGTTCGTGCGTCGGTGATGAAGCTTTATTCCTGTGCCTTAAAACCTAGAAATAACTATCTAATTTAGTGATAGGCCCACGGTACTCGTGATTTATCCActtatatcaaatatattttctatCAATTATCTTATTTTCGAATTTCCCAGTTAtattttggtcttaatttaaggcaCTGTAAAAGTAAgcatttttatgtatttattattgTTCTCTGCATTTATCAAATCAATGCTGGGCATTGCTTTTCTCTATGAAATATTGGTACGTGTAGATTCGTTATTAATGTAGGTTATGGTGAGAATCATATTTACATTATGTGCCACAACAACTACTACTGAATAATAACCGGTACAGTTCAAGGGATATTCCTAATCTTCAAGTAAGGTGCATAGAATTTTGCACCGCTTCGAACTTGTCAGTAATGATGTTGAGAATAGAGGATTATGGCGAAAATTGCCAATCTTGTACTTTCACTCCTCGTTCTGAGACCCGCTGTCGGGTGCTAATAACCCCCTGAGGGAAGTCATTAGACATGACAGATAAAAGACTTGGAACATACAACATTGTTCTTGGTGCTTAGATTGTACCGTAAAATGTGACATTCCTTACATgtgaaggtttaaaaaaaaaagtgtactcGGTAGAGCCAATGTTCGTTTCAGTTAGAAGTTGGATCCAGCAACTGCCCTTTACACTTTTCCTGTTATATTTCCGTTACATGTTATATGGAGCAACCTTGTTCAATTAAAAACGGTATTTCCATTCTTTCCCAATCTGGCCCCCTTCACTCAACAGACAGTACATATCGTTCAAATAGTTTTCAACCAAAATATTTACCGCTGTGGATTGGAAAACGACCCATGACGTGTAAATTACATTTCTTATATATAGATATTAATAATTTATCTGACTTGTTGAATGTTTATTCAATTTAAATCCGTATACACTGGAGATCATACACGCCTATTTCACCATAACTTTTGACTATTATATTGTAAGGTAAACATGCTTCTATGGCAACAAACAAACCAAATAAGTCGTATGCAAAATACACGTTATAAGTCCATACATGTAAAAGGCGAGAGTACATGTTGTACTACATTGAAACAAGGCCTCCAAGGGCTGATAAAAGGATAAGTGAAAGCTGTTTAAAAAGGTTGAAATAATGAAATACTAGTGTATTGCCCTATGTCCCCAGGGTCTCTGAGATACATGGATCTGTATATTATATCTCTGTGTTTAAAATATTACCAACTGTATGAATTTACACATTTTAACTTgagaaaaaaatgtgtaaataTCTTTATGTAAATCATGTCATTTATTGATGATGTTTGTTCTTGGGAaataaatctttttttttaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076077 lncRNA upstream 20397 44953926 ~ 44963514 (+) True G1814713
TU2076049 lncRNA upstream 59867 44923763 ~ 44924044 (+) True G1814689
TU2076047 lncRNA upstream 63502 44920179 ~ 44920409 (+) True G1814687
TU2076046 lncRNA upstream 63880 44919509 ~ 44920031 (+) True G1814686
TU2076044 lncRNA upstream 64623 44917549 ~ 44919288 (+) False G1814685
TU2076064 lncRNA downstream 21561 45009405 ~ 45022153 (+) False LOC110501931
TU2076070 lncRNA downstream 21768 45009612 ~ 45011090 (+) False LOC110501931
TU2076063 lncRNA downstream 21970 45009814 ~ 45022153 (+) True LOC110501931
TU2076066 lncRNA downstream 35614 45023458 ~ 45024584 (+) True G1814704
TU2076136 lncRNA downstream 55520 45043364 ~ 45043650 (+) True G1814769
XM_021579795.2 mRNA upstream 325342 44647142 ~ 44658569 (+) False LOC110501922
XM_036959401.1 mRNA upstream 325342 44647146 ~ 44658569 (+) False LOC110501922
XM_036959402.1 mRNA upstream 325342 44654045 ~ 44658569 (+) True LOC110501922
XM_021579792.2 mRNA upstream 409993 44566863 ~ 44573918 (+) False LOC110501918
XM_021579789.2 mRNA upstream 511043 44468192 ~ 44472868 (+) True LOC110501916
XM_036959408.1 mRNA downstream 21903 45009747 ~ 45022170 (+) False LOC110501931
XM_036959409.1 mRNA downstream 21903 45009747 ~ 45022170 (+) False LOC110501931
XM_021579820.2 mRNA downstream 185047 45172891 ~ 45175477 (+) False LOC110501942
XM_021579822.2 mRNA downstream 185149 45172993 ~ 45175477 (+) False LOC110501942
XM_036959411.1 mRNA downstream 188051 45175895 ~ 45251964 (+) False LOC110501941
TU2074893 other upstream 409990 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 475860 44498457 ~ 44508051 (+) True G1813665
TU2074792 other upstream 611988 44362661 ~ 44371923 (+) True G1813588
TU2074675 other upstream 663800 44318158 ~ 44320111 (+) True LOC110502169
TU2074609 other upstream 873044 44109320 ~ 44110867 (+) True G1813442
TU2076178 other downstream 122703 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 185131 45172975 ~ 45175472 (+) True LOC110501942
TU2076385 other downstream 534076 45521920 ~ 45527440 (+) True LOC110502177
TU2076542 other downstream 737303 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 793655 45781499 ~ 45782536 (+) True G1815137

Expression Profile