RNA id: XM_036959411.1


Basic Information

Item Value
RNA id XM_036959411.1
length 1841
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110501941
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45175895 ~ 45251964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAAAATATTTCTCCTTTTTGCTTTCATTTTGGACAGTTTTGCATTTGGTATTTACCTGGGTTCATTCCTCCACCCCACAAATGATAACATTTACCTTTTGTATTTAGGAGACTTCTGTAATAAATTCTCACTGTTCTGGTGGGATTCATTTCCAACTGCCCTCAACTGTAGTTGTAGTTCTTCCAAGGCCTTGTTCACCTGGACTCCCATGTCGATCCTTCCTTTGCTGACCAAGCACTTTATTCAAGATTAGATCCTCTAATAATCTGGACGCTTGTGTGCTTTATATGAAATGTTATGTTTCATTGTGGTTGTTTGGCATTGGCCTAGCATACTGCATGCACCAAATCTCTGCTGTCATATCCACACAAGGTCGTTGGAATTATCACAGCATTTATTCTCATGACTAGCTATAAAGATAATTGAAATTGACAATATACTAAAATGTATTGTCAACCGATTTCTCTTCATTTCTATAAAATTGCCGTTGCTATCTGTACAGCGGAGATGCTGCTCTCGCGAGAGTTGCACAGACGAGTTATTTCGATACGAAGGGTTGCGCTGGTGGGTAAGTGCACGAGCTCAAGGAGATTGTACACAAAGATATCGCACGTGTACCGATTTCTTGGCATTAGTGGGGATTTAAGTGTTAAGAAAAACGAGTCTGTGATAAATGCACATCCTTCATGTATTAACATTAGTAAATACAGTTAATATGGCGACCGTACTATGCAGATGTTAAGGCGGTGTGGATAGGACGAGCAAGCAAGCTAGTTGGTGATGCGGAGGAGTGGTGTGTAAACAAAACCATCGCACATTGTTTTGTAAGATTGCGCTGAATTATTTTTTGAACAATTCTAAGTAATTGGGTTTCAACTGTTTCTTCTGCATAAACGCACTATGACGTCGAGTGTCATCTTTCACAATTCGAGTTTCCACTAACCATTTTGATAAGAGATTTTTTTTGTTCTAACCCCAACAATATTCTCACTCCTGATTGGAAAAGACCATGCATTTACAAGAGGAAGCTGCCAACTTTCCATCAATAAGCTATGTCCCCAAGATAAAAATCTTTGAAAGAGCCTATAAGCGATTTACAAATGAAGACCATTTGGCTGTCCACGAACACAAACATGAGATGACACTAAAGTTTGGTCCAGCAAGAGGCAACAGTGTCACAGTAGCCGacccaaagccaacacctacacTCTTTTTGAAGTACTGTGAGGAAGTTGGACTCTTCAACGAGCTTACCAGTGTCCCTATGGAGCATGACTTCAAAATAGCTGCTGTGGATGACATCAACAAGGTGCCCTTGGATTTGTCGCCTCTTGCCACACCGATGATCATACATAACAAAATTGAGGACCACTCAGCTGTGGTGGCACATTGGGACAGCCCTCTGCCCCATCCAGAATCTACAACAAGGGATGACAAGTTATCTTTGCAGCCGTCCTCACTGCCAAGctctactatagtccatcctGCATCTCTCCAAGTCCCCAATGTGCTTCTAGCAACCTCAGATGCTAGTGTTGTTATACAGCAAGCTCTCCCATCGCCAACATCTAGCTCTGTAATTACCCAAGCCTCATCCTCTAAAAGGCCAATAGTGTAATCCAGTCTCTGGCACTTTCCCCATACTCTTTCAGCTGCCTAATGGACAGACCATGCCCGTCGCTATCCCAGCAACCATTGCATCCCGTGTACACATTCCAATCGCCATTCCTCAGTTACAATATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgtgtcagATCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076216 lncRNA upstream 12175 45163188 ~ 45163720 (+) True G1814848
TU2076215 lncRNA upstream 14069 45161604 ~ 45161826 (+) True G1814847
TU2076214 lncRNA upstream 14379 45161270 ~ 45161516 (+) True G1814846
TU2076197 lncRNA upstream 38234 45137428 ~ 45137661 (+) True G1814830
TU2076191 lncRNA upstream 45399 45130276 ~ 45130496 (+) True G1814824
TU2076268 lncRNA downstream 55474 45307438 ~ 45364827 (+) True G1814898
TU2076270 lncRNA downstream 56391 45308355 ~ 45478991 (+) True G1814899
TU2076315 lncRNA downstream 123529 45375493 ~ 45414937 (+) True G1814936
TU2076320 lncRNA downstream 217584 45469548 ~ 45471116 (+) True G1814941
TU2076405 lncRNA downstream 296412 45548376 ~ 45548598 (+) True G1815016
XM_021579820.2 mRNA upstream 418 45172891 ~ 45175477 (+) False LOC110501942
XM_021579822.2 mRNA upstream 418 45172993 ~ 45175477 (+) False LOC110501942
XM_036959408.1 mRNA upstream 153725 45009747 ~ 45022170 (+) False LOC110501931
XM_036959409.1 mRNA upstream 153725 45009747 ~ 45022170 (+) False LOC110501931
XM_021580002.2 mRNA upstream 188051 44983911 ~ 44987844 (+) True LOC110502137
XM_036959413.1 mRNA downstream 10251 45262215 ~ 45267589 (+) True LOC110502139
XM_036959414.1 mRNA downstream 75145 45327109 ~ 45329041 (+) True LOC110502173
XM_036959599.1 mRNA downstream 259887 45511851 ~ 45513763 (+) True LOC118943643
XM_036959600.1 mRNA downstream 274324 45526288 ~ 45527893 (+) False LOC110502177
XR_002470277.2 mRNA downstream 335758 45587722 ~ 45606501 (+) False LOC110501945
TU2076159 other upstream 423 45172975 ~ 45175472 (+) True LOC110501942
TU2076178 other upstream 64666 45110547 ~ 45111229 (+) True G1814811
TU2074893 other upstream 601974 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 667844 44498457 ~ 44508051 (+) True G1813665
TU2074792 other upstream 803972 44362661 ~ 44371923 (+) True G1813588
TU2076385 other downstream 269956 45521920 ~ 45527440 (+) True LOC110502177
TU2076542 other downstream 473183 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 529535 45781499 ~ 45782536 (+) True G1815137
TU2077403 other downstream 906695 46158659 ~ 46169901 (+) True LOC110501947
TU2077416 other downstream 924643 46176607 ~ 46177757 (+) True G1815855

Expression Profile