RNA id: TU2074675


Basic Information

Item Value
RNA id TU2074675
length 800
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC110502169
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44148629 ~ 44324651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctcattctctctctcaatctctctctctcatagcaaCCCACTGTTTCCCCTATGTGAAGAAGCGTATTGCGGTGATGTACCAGCACCACACAGACTTGAACCCCATAGAGGTGGCTATAGACGAGATGAGCAAGAGGTTGACCGAGCTGAGACAGCTAGTTGCCACCAACGAGGTGGACATGATCCGCCTGCAGCTGAAATTACAGGGCAGCATTAGTGTCCAGGTGCAGGCCTCCGTCCTTACAAACCACATCGTCTATCCTCACAAACCACATCCTCCGTCCTTACAAACCACATCCTCTGTCCTCACAAACCACATCCTCCGTCCTCACAAACCACATCCTCTGTCCTCACAAACCACATCCTCTGTCCTTACAAACCACATCCTCTGTCCTTACAAACCACATCCTCTGTCCTCACAAACCACATCCTCTGTCCTCACAAACCAGATCCTCTGTCCTCACAAACCACATCCTGCGTCCTTACAAACCACATCCTCTATCCTCACAAACCACATCCTCTGTCCTCACAAACCACATCCTCTGTCCTTACAAACCACATCCTCTATCCTCACAAACCATATCCCTCAACTTGTTCTGTATGGTAAATATATCCCTCAACTTGTtATGTATGGTAAATATATCCCtcaacttgttctacatggtAAATATATCCCTCAACTTGTTCTGTATGGTAAATATATCCCtcaacttgttctacatggtAAATATATCCCTCAACTTGTTCTGTATGGTAAAGAAATCCCTCAACTTGTTCTGTATGGTAAAGAAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074782 lncRNA upstream 10098 44307037 ~ 44308060 (+) True G1813581
TU2074775 lncRNA upstream 18068 44299230 ~ 44300090 (+) False G1813578
TU2074778 lncRNA upstream 18068 44299230 ~ 44300090 (+) True G1813578
TU2074674 lncRNA upstream 39042 44278810 ~ 44279116 (+) True G1813489
TU2074762 lncRNA upstream 48956 44268556 ~ 44269202 (+) True G1813566
TU2074839 lncRNA downstream 153576 44473687 ~ 44521500 (+) True G1813624
TU2074840 lncRNA downstream 154162 44474273 ~ 44478751 (+) True G1813625
TU2074870 lncRNA downstream 164323 44484434 ~ 44484903 (+) True G1813654
TU2074882 lncRNA downstream 175781 44495892 ~ 44496576 (+) True G1813664
TU2074889 lncRNA downstream 189300 44509411 ~ 44510375 (+) True G1813669
XM_036959380.1 mRNA upstream 19813 44194925 ~ 44298345 (+) False LOC110502169
XR_005038840.1 mRNA upstream 172276 44024277 ~ 44145882 (+) False LOC110502168
XM_036959364.1 mRNA upstream 174114 44024275 ~ 44144044 (+) False LOC110502168
XM_036959362.1 mRNA upstream 174114 44024277 ~ 44144044 (+) False LOC110502168
XM_036959363.1 mRNA upstream 174114 44024277 ~ 44144044 (+) False LOC110502168
XM_021579783.2 mRNA downstream 6799 44326910 ~ 44351877 (+) True LOC110501911
XM_036959386.1 mRNA downstream 61441 44381552 ~ 44438653 (+) False LOC110501915
XR_005038842.1 mRNA downstream 61441 44381552 ~ 44438653 (+) False LOC110501915
XM_036959384.1 mRNA downstream 61442 44381553 ~ 44438653 (+) True LOC110501915
XR_005038843.1 mRNA downstream 132141 44452252 ~ 44461895 (+) False LOC110502170
TU2074610 other upstream 207291 44108244 ~ 44110867 (+) False G1813442
TU2074604 other upstream 207291 44109320 ~ 44110867 (+) False G1813442
TU2074607 other upstream 207291 44109320 ~ 44110867 (+) False G1813442
TU2074609 other upstream 207291 44109320 ~ 44110867 (+) True G1813442
TU2074041 other upstream 1167774 43149762 ~ 43150384 (+) True G1812953
TU2074792 other downstream 42550 44362661 ~ 44371923 (+) True G1813588
TU2074885 other downstream 178346 44498457 ~ 44508051 (+) True G1813665
TU2074893 other downstream 246777 44566888 ~ 44573921 (+) True LOC110501918
TU2076178 other downstream 790436 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 852864 45172975 ~ 45175472 (+) True LOC110501942

Expression Profile