RNA id: TU2074840


Basic Information

Item Value
RNA id TU2074840
length 4079
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G1813625
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44474273 ~ 44478751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctcaacaatgCATTAATCTAGAACATCACAGACTACATGATCCTCCTCAAATATCCTGATGAACTAAGTATGATGTTGATAGTAAAAGTCTTTACAATCAGTCCAATCCAAAAGAGGAGACAGGAATATTCTGCTGTTTACATGTGTTTACAGTGCAGTAAAGTACTGGGCTGACAGTATGATACTGACAATAACAGTGATCACAAATGAGTGGAGTTGACTGCACAGAAAATGAGAATATCTAGAATATCTAGATTTATGGGAAATGTCATTGTCCCCCTGCCTACATCGTACCAAGATTTCAGACACATTTCCGAGCACTTCTATTCCCCAAcattatacagtacataatacaaCTTGGGGAACAATACTCAAGTGGGGAAAGTGGTTGATTGGATTTGAAATGGTTTCCTTATCTGACTTGTATGTGGTTTCTTATCAACATTGTGTGCGAGGCGTTAATCAAATGTATTAAGGCACATCAAATGGAAGTGACAGCGGACAAACAAATTCGATTTCTGAATACATGGCTACGATATGACGTTTGTAGTCATATCTTAATTGTTTTTCTGTCTTAATCTTCAGTACTGGACATTACACACGAAAATAATAGTTAAGACTTTATAGTTGAACGTTTCCAGTCTATATATTTCTAACGTAGGATCACTTTCCTCGTTTCAATTTCCGGCTTCACTAGAACAAAAACAAAGAACAAATCAATATAATCCAAATGTATAATGTATCGTTACAGATTCTGTGGTAATCTAACACACTGAACCATTGTGAATGGACTGCGACACACAATGACAAGAGGGAAGGGGGGACGTCAAATATACACTAAAGCTGTTTGGCAGTAATAATCTAAACCTTTTAAAATTGTATTGGTGAATGGTTAAGGACAACATCATAGCAGTAAATTCTAGGAACTGGACACTTGTTTAAAGGATAATCAAATATAATAGCTTTTTCTCTGTGTGGTTAACTACATAATGAAAACACCATAACTAGAATGAGTTGATATTTTTTCtataattaaaaaaacatttgtctTTGGCTTTAACATCAACATTCTGCCACGTTAAAGGATTTGCAAAAGCAAAATAATTCTGAACGTTGTAAAATAATTTTGTCCCTTGGCCTCTTTTACATAACACAAATTAATATGTCTATGGGAATCTGTTATGTATAGTCAAAGAACTGGCAAATAGGCATCCCTTGTGTTTTACAATACACTTGTATgtggggatatctagtcagtcagCCTGGTGTACTGTAGTTGTATAAGTGGGGCTATCTAGTCAGTCAGCCTGGTGTAGTTGTATAAGTgggggtatctagtcagtcagtctggtgTAgtgTAGTTGTATAAgtggggtatctagtcagtcagccTGGTGTACTGTAGTTGTATAAGTGGGGGTATCTAGTCAGTCTGGTGTACTGTAGTTGTATAAGTgggggtatctagtcagtcagtctggtgTACTGTAGTTGTATAAGTgggggtatctagtcagtcagtctggtgTAGTTGTGACTCTCCAATGATCATGTGGATCCCAGTAGGGGTCACGTGGTTCCCAGTAGAGGTCACGTGCTTCCCAGTAGAGGTCACGTGCTTCCCATTAGAGGTCACGGTGTTCCCATTAGAGGTCACGTGGTTCCCAGTGGAGGTCACGTGCTTCCCAGTAGAGGTCACGTGGTTCCCAGTAGAGGACGCGTTGACCTCTATACTGCTACAGGACAGCAGGACTACTACTCCACTTTCACTACGCTTGTCATTTCACTGAGGGGCTTAGTTGGAAAAATAACGTGAAAGGGAAATACACTAACTAGCCAACCAGCTACCACATTATACATAGACCTGTATCAAAGATGAGTCGGTGTAACCATGTATCCAGACAAGTGACCCGGGTTTAAATAGATTCTTTAGAAGGGATGGGCACACGGCCAGTAGGTATGTCGTCATATCACCATATCAGATGTCTTGGATGCTGGCATGTCTTTATAGTTCTACTGCAGGCTAGGATTCTCACTATAacactcagacaacaacacagatcaATTGTATTACAGGAAATTAAAGAACATTCAAATTATATTCATACCTTTTTTTTCCTTTCTTAAACTATCAAAAATAGTTTTCGTGTGAGCTGAATAACAGAAAGCAGAATTGTCTATACATGTAAAAGTTAGTTACAAGGAAGTATTGTCTGTAGCTTAAACCGTTGTGATGAGTGACGAGGGGGGTGTGCTTCGAAAAAGGGAGGCACTTTCCAGTGCTTATGTATCAGCTGTTGGGCCAGTCTCCCTCAACTAGCCAAACTGGAACTATAAACGTCTCAACTCAAGGGGTTTTGTCTTTGGGAGTTGCTGAGAAAACGTCTCGGCACACAGCAATGACCTTCACCAATACCAGTGATTAAAACAAATTAAAGACGTGTTCCGGAACTTTGGCGACTAATacgttttttaaaaatatatttttttacatttttttaaacctctCGCTTTGGGCTAGATGTGTCAATAGCCACGTTTATACCTGTCAATAACATGCGCCCTTTGTCCTGTTCTTGTCCTCATTCTGATTGTGccacatttttagacaggtgtagatCAATATAAAAGACACATTGTGAACTGAGTTTGATCAGACCTTACAATTGTATACTGGCAAGATCAGGATGAAGGACGCACGTAAGTGGCAGGTATAAACGGGGCTAATGTATAGTTCATACATGCAGAATTATGGTTTTTACCTCAATTAGACACACacaatccctagtttgaaagtgaCTGTTTTTCTGGAAGCTGAGCTGCACCATTTTCCACCACGTGGTCCAGCCCCCTAGAAATTTGAGTTCAACCAATGAGCTTCaaccatttgagtgacagctaacAAGAGGCACAtcatgcacacacagcagagagagagagagggagacagagcaatGATGTGGTGCACAAATCTGCACATACGTGATGTAGTACACAATTTTCCTATTTTTTTTGGCTCGtgagtgctactttcagaactactggctaaaaactATACAAAACTACCGGAGAATCTCTAACTTTCACAAAGAATGTGTGACCCAATAAAGAATACAGCTATGATTCAGACTGAACTAATGCAAATggctaattaaaaaaaaaagaaataagaGCAATCTTCCAATATTGTATATTAGTTAAATTTTCACTCAATTCTATGATGTTGAAGATATTTTACAAAAACTTCAGACTTCTttattttctttttgtttttaaaACAAATAATGTTAGTCTATATAGGATATGCCAATGAAAGCTGAACTCTAAAACATGCATGACACATACATTAGTAGTAGGTCAAAGGCCTAATCCAAACACTAGTCTAAATCAAACCGCTTTCAGAACAAACACTAGTCTAAATCAAACCGCTATCAGAACTCAAGTGGGTTTCACTAAAAGCTTTAAAATGTGTGGTGTGGATAGATGACATTAAGGCAAGGACAAACACAAAACGACTTAGGATAGATCTACATGGTAAGATTGTTGCCCTGACAACCCAGCCTCCGCACCAAGCTCAATGAGGGGGATCCAAGAGGATGCTTGAATGGGTGACTGGCCAGCTGAATAGGGCGATGGTAAGTCATCAACTCATCTCAGCTCTTGTATCCTTCCACACTGTTATTTTGTCAATGAGATATTCATTTGAAAACCTCATTGTGCATAGATAAAAGCCTTTGTCAGCGATGATGATATGGTGTGCATAGCGATCCATATGCTACCATAGATTAGGGTTTTCCATGTTGATGAAGCCGGGGGATTTGCGAAGCTCCCAGTAGGTGTTGTTAGTGACCCAGCGCTCCCTTTGATTGGCATCAACCACTTTCCTGGGAGGAAAGAGACGGGCAATCAATGGTAGGGAGTTAGATGTCATGAATGGAATGGATAATCATTAATGACACAACTCAGCCACACAAGTAACAGTCAGAGGTATTTCTATCTATCTTGGGGAGACCCTAACCAACTTACCCAGTTCCCCCACGAAGCTGGCCTGGGGAAAACCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074665 lncRNA upstream 149622 44313475 ~ 44324651 (+) False LOC110502169
TU2074671 lncRNA upstream 149622 44314914 ~ 44324651 (+) False LOC110502169
TU2074782 lncRNA upstream 166213 44307037 ~ 44308060 (+) True G1813581
TU2074775 lncRNA upstream 174183 44299230 ~ 44300090 (+) False G1813578
TU2074870 lncRNA downstream 5683 44484434 ~ 44484903 (+) True G1813654
TU2074882 lncRNA downstream 17141 44495892 ~ 44496576 (+) True G1813664
TU2074889 lncRNA downstream 30660 44509411 ~ 44510375 (+) True G1813669
TU2074900 lncRNA downstream 41311 44520062 ~ 44520589 (+) True G1813679
TU2074917 lncRNA downstream 62264 44541015 ~ 44541680 (+) True G1813695
XM_021579789.2 mRNA upstream 1405 44468192 ~ 44472868 (+) True LOC110501916
XM_021579790.2 mRNA upstream 4063 44468192 ~ 44470210 (+) False LOC110501916
XM_036959390.1 mRNA upstream 11256 44452276 ~ 44463017 (+) False LOC110502170
XM_021579792.2 mRNA downstream 88112 44566863 ~ 44573918 (+) False LOC110501918
XM_021579795.2 mRNA downstream 168391 44647142 ~ 44658569 (+) False LOC110501922
XM_036959401.1 mRNA downstream 168395 44647146 ~ 44658569 (+) False LOC110501922
XM_036959402.1 mRNA downstream 175294 44654045 ~ 44658569 (+) True LOC110501922
XM_021580002.2 mRNA downstream 505160 44983911 ~ 44987844 (+) True LOC110502137
TU2074792 other upstream 102350 44362661 ~ 44371923 (+) True G1813588
TU2074675 other upstream 154162 44318158 ~ 44320111 (+) True LOC110502169
TU2074604 other upstream 363406 44109320 ~ 44110867 (+) False G1813442
TU2074885 other downstream 19706 44498457 ~ 44508051 (+) True G1813665
TU2074893 other downstream 88137 44566888 ~ 44573921 (+) True LOC110501918
TU2076178 other downstream 631796 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 694224 45172975 ~ 45175472 (+) True LOC110501942
TU2076385 other downstream 1043169 45521920 ~ 45527440 (+) True LOC110502177

Expression Profile