RNA id: TU2074665


Basic Information

Item Value
RNA id TU2074665
length 3960
lncRNA type sense_over
GC content 0.42
exon number 7
gene id LOC110502169
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44148629 ~ 44324651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTAACTAGTTGCTTTTGACAGTTTGCTTTGTTGGAGTGGATAACCTTCCCAGGACCATGTTCCTTCTGACTCTGTGTTCTTTCTGTATGTGGTGTTATGGTGTGAATGCTTACCTGCTATAGTTGTAGCCTGGGTAGTGTTGGAATAACTATCATTTTGTTTTCTGTTGCTCTACCTTACAACTCCGTAGCAGTACCAGTTTACTGACTCTGAGACTGAGGGATTCTTTGAGGATGAAGATGGTAAGGAGTACATCTACAAAGAACCCAAATTCACCCCACTGTCAGAGATATCTCAGAGGCTACTCAAGCTCTACTCTGACAAGTTCGGCCCGGAGAATGTCAAGATGATTCAGGACTCTGGGAGGATCAACACTAAAGATCTGGACTCTAAGTACGCCTACATCCAGGTGACCCACGTAACCCCGTTCCTGGAAGAGAAGGAGCTGATGGACCGGAAGACAGACTTTGAGAAGAGCCACAACATCCGGCGCTTTGACTTCGAGATGCCCTTCACCGTGTCGGGGAAGAAGCAGGGTGGGGTGGAGGAGCAGTATAAACGCAGGACCATCCTGACCAGTAAATGCTGGTCCCCTCGCATATGCCCGAGCTTTCCTCGATGATGCCAGCACCAAGAAGTACCCTGACAACAAGGTCAAACAACTTAAAGAGGTCTTCAGGCAGTTTGTGGAGGCGTGTGGCCATGGTCTGGGCATCAACGAGCGGCTGATTAAAGAGGACCAGCAGGAGTACCATGACGAGATGAAGGCCAACTACAGAGACCTGGCCAGAGAGCTGTCCGCCATCATGCACGAGCCAATCATTCCAGTGGAGGATGGCATGAAGAACGTTCTTCCAGACTCACTGCACATCTTCAACGTCATCAGTGGTACCCCCAGTGGTACCCCCAGTGGTGCCACCATCGTGGGCCTGCCCAACTCCTCCTCTGTGGTGTGAGACCCACCGGATTGGCTGACTCCTGACCTCAACGCTCTGTGCCAGCGCTGCCATGAGTGGCCATTTCCTGCTTTTCTGTTCTCCTTATCATCAAGTTTGCTTTTGGCTAAACTGAGACAATATTGATGTTCTGTTAATTTTCTTTCACACCTTCTCTGGCTTGTCCAATGGGCCAGGACAAAGGACCGTGTTACACAGTTGTATAGAGTACAGTCACTCTGTGGAGGATgggactggtgtAGCCTCCATCCTGACTGGGGTTCCTGTCTGTGGAGTGTTGGGGTTCCATGATGTatacagtgggaagaaaaagtatgtgaaccctttagaattacctggattCCTGCacaaattggtcatacaattttatctgatcttcatctaagtcacaacaatagacaaacacagtctgcttaaactaataacacacaaacaattataatttgtcatgtctttattgaacacaccatgtaaacattcacagtgcaggttggagaaagtatgtgaacccttggatttaataacctatgccgctctgtaccatcactcattcatatatctttatgtacatattctttatccctttacacttgtgtgtatgaggtagtagttttggaattgttagttcgattactcgttggttattactgcattgttggaactagaagcacaagcatttcgctacactcgcattaatatctgctaaccatgtgtatgtgacaaatacatttgattttatttgatttagaggttaaccctcctttggcagcaataacctcaaacaggtagttgtggatcagacaggtagttgtggatcagacctgtacaacggtcaggaggaattttggaccattcctctttataaaactgtttcagttccacaatattcttgggatgtctggtgtgaaccgctctcttgaggtcatgccacagcatcaggactgactgggccactccagaaggcatattttcttctgttcaacCCATTCTGTTGATGATTTACTTCTGTCTATTGGGTTgatgtcctgttgcatcaccttacttctgttgagcttcaattggcagacagctAGCCGTACATTCtattgcaaaatgtcttgataaagttgggaattcatttttccttCGATGATAGCAGGCTGTCCAGGCCATGAGGCAACAAAGCAGCCCCAAatcatgatgctccctccaccatactttacagttgggatgaggttttggtgatggtgtgctgtgcctttttttctccacacatagtgtggtgtgttccttccttccaaacaacacaactttattttaatctgtccacagaatatttttccagtagcgctgtggaacatccaggtgctcttttgcgaacttcagatgtgcagcaatgttttttttggacagcagtggcttcttccatggtgtcctcccatgaacaccattcttgtttagtgttttatgtattgtagatcatagactcgtcaacagagatgttagcatgttccagagatttctgtaagtctttagagctggcactctaggattcttcttaacctcattgagcattctgctctgtgctcttgcagtcatctttgcaggacgcccactcctagggagagtagcaacagtgccgaactttctccatttatagacaatttgtcttaccatggactgatgaacgTCAAGGcctttagagatacttttgtaaccctttccagctttatgcaagttgACAAATCTTAATCTTATGTCTTCTgcgatctcttttgtttgaggcatgggaCACATcgggcaatgcttcttgtgaatagaaaACTCAAATTGTGTGAgtgtttttatagggcaaggcagctctaatcAACATCTCCAATCTAGTCTCATTGAtttgactccaggttagctgagtCCTGACTTCAATTAGCTTTTGgggaagtcattagcctaggggggttcacatactttttccaacttacactgtgaatgtttaaattatgtattcaatatagacaagaaaaacacaataatttgtgtgttattcgTTTAAGCACagtgtgtctattgttgtgacttagatgaaaatcagatcaaattttatgtcaAATGTATGCAGAAATCCATTTAATTCAAAAGGGTTCACCTACTTTTTCTTGCTACTGTATATGACATCACTGGTAGTGTTTCCTGTGGAGCCGTCCCCATAGGGATCCTTAAAGCGACAGAAATGTGCATGTGATGTCACTAGCCCTCATCAGCTTTCTGTCGTCTCATTTTGATCTCTGTTTGTTTCGATCATTTGTCTTCTGCTCTGAACTCTTCAAGTGATTTTCTTTGTGTTGATGTCTTGACGAACATTATAAACcaggtggtttgagccctgaatgctgattggctgaaagctgtggtatatcagaccatttACCACggctatttaaaaatatatatatacgttagtaaccagtttataatatcaataaggcacctcagtggtatatggccaatatagcacggctaatggctgtatccaggcactcagtGTTTGCGTcgtacataagaacagcccttagccgagGGAATATTGGCCATAAACTAgtcccctgaggtgccttattgcttaaacatATGCTGCATACATTGGCATTCATCTCTCTGTACATGTACACGAAGACGTGTTATATTTCTACAAAGCTGCAATTTATTGGAAAAATAGCCTCCTATGAAAAAGTTAGCATTCAACCTTAATCATTTAAATGTCTTAGaatgggatttttttattttatatttaaagCCATTGCGTATAAgtatattccaagctgtttattcatgtatataaaAAAGGAGTGCAATATTTGTATTTTGCAAGGTACAGTGTCTTGCTGTGTTGGGTTCAATAATACATTGTAAAGATTATGTTCATCCTTCTTTTCAAAGCAATTCTAGTGTTTATTCACAGACCTACCATTTTGAGTGTTTATTCAAATATTTAAAGAAATCGTTTTATATTTGGGAAGCAATgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074782 lncRNA upstream 5415 44307037 ~ 44308060 (+) True G1813581
TU2074775 lncRNA upstream 13385 44299230 ~ 44300090 (+) False G1813578
TU2074778 lncRNA upstream 13385 44299230 ~ 44300090 (+) True G1813578
TU2074674 lncRNA upstream 34359 44278810 ~ 44279116 (+) True G1813489
TU2074762 lncRNA upstream 44273 44268556 ~ 44269202 (+) True G1813566
TU2074839 lncRNA downstream 149036 44473687 ~ 44521500 (+) True G1813624
TU2074840 lncRNA downstream 149622 44474273 ~ 44478751 (+) True G1813625
TU2074870 lncRNA downstream 159783 44484434 ~ 44484903 (+) True G1813654
TU2074882 lncRNA downstream 171241 44495892 ~ 44496576 (+) True G1813664
TU2074889 lncRNA downstream 184760 44509411 ~ 44510375 (+) True G1813669
XM_036959380.1 mRNA upstream 15130 44194925 ~ 44298345 (+) False LOC110502169
XR_005038840.1 mRNA upstream 167593 44024277 ~ 44145882 (+) False LOC110502168
XM_036959364.1 mRNA upstream 169431 44024275 ~ 44144044 (+) False LOC110502168
XM_021579783.2 mRNA downstream 2259 44326910 ~ 44351877 (+) True LOC110501911
XM_036959386.1 mRNA downstream 56901 44381552 ~ 44438653 (+) False LOC110501915
XR_005038842.1 mRNA downstream 56901 44381552 ~ 44438653 (+) False LOC110501915
XM_036959384.1 mRNA downstream 56902 44381553 ~ 44438653 (+) True LOC110501915
XR_005038843.1 mRNA downstream 127601 44452252 ~ 44461895 (+) False LOC110502170
TU2074610 other upstream 202608 44108244 ~ 44110867 (+) False G1813442
TU2074604 other upstream 202608 44109320 ~ 44110867 (+) False G1813442
TU2074607 other upstream 202608 44109320 ~ 44110867 (+) False G1813442
TU2074609 other upstream 202608 44109320 ~ 44110867 (+) True G1813442
TU2074041 other upstream 1163091 43149762 ~ 43150384 (+) True G1812953
TU2074792 other downstream 38010 44362661 ~ 44371923 (+) True G1813588
TU2074885 other downstream 173806 44498457 ~ 44508051 (+) True G1813665
TU2074893 other downstream 242237 44566888 ~ 44573921 (+) True LOC110501918
TU2076178 other downstream 785896 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 848324 45172975 ~ 45175472 (+) True LOC110501942

Expression Profile