RNA id: XR_005038840.1


Basic Information

Item Value
RNA id XR_005038840.1
length 5791
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC110502168
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44024275 ~ 44145882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTGGAGTAACAAGACAAGAGAGGATCTGCCACTAATTTCAATGTAATCCTGTCTATCGCACAGTCGGCCGACATGGCGACCATGAAGAAGCTTCTCGCTGGAGAAACCAGCATCTGAATTCAATTTGGTTCCACAGAAGCAGCTTGAACTGCGTCGAAGTGGATATAAAATATTTTGTCAATTGGGAAATATACACGGGAATTGTCCACAGTTTTAAGACGGGGCTGGATGGTAGCAGGACAGAGCACCATGGTGGAGCCCAAGCCCAGAGCATCAGCAGCCCAGCGTCTTGAAGCCCAGGAGACTCTGGGTATCAGCACCCTGGACCCTGGCCACAGGCCGCCCATCATGCCCCCGGGACGCCATGTCACCATCAAGGTCCGCATGTTGGACGACACAGAGGAGGTCTTTGACATCTCACAAAGAGCCTCAGGCAAGGTGTTGTTTGACCTGGTGTGTACCCACCTGAACCTCGTTGAGGGAGACTACTTCGGCCTAGAGTACCAAGACCACAAGATGATGGTTTGGTTAGACCTCCTAAAGCCTATTGTCAAGCAACTGAGACGGCCCAAGCACGTAGTCCTGAGATTTGTGGTGAAGTTCTTCCCCCCAGACCACGCCCAGCTACTGGAGGAATTGACCAGGTACCTCTTCGCCCTGCAGATCAAGCATGACCTTGCCTGTGGACGTCTGACCTGCAACGACAGTAGCGCGGCCCTGCTGGTCTCCCATATTATCCAGTCTGAGATTGGGGACTTTGAGGAGAGTCAGAGTCGGCAGCACCTCCTCAACAACAGCTACATTCCTGACCAGATGGCTCTGATGGACAAGATCATGGAGTTTCACTCCAATAATGGGGGTCAGACGCCAGCAGAGTCGGACTACCAGCTGCTGGAGGTGGTACGCAGACTGGAGCTGTACGGGGTTAGACTACACCCTGCCAAGGACCGCGAGGGCAGCAAGCAGAGCCTGGCCGTGGCGCACACTGGTGTCCTGGTCTTTCAGGGACACACCAAGATCAATGCCTTCAACTGGTCCAACGTGCGCAAATTAAGCTTCAAGAGAAAGCGTTTTCTCATCAAGCTCAGACCAGACCTGAACCAGAGCTCATACCAGGACACTCTGGAGTTCCTGATGGGTAGCCGAGACTGCTGTAAAGTCTTCTGGAAGATCTGTGTGGAATACCATGCCTTCTTCCGCCTCTTTGAGGAGCCCAAAGCAAGGCCCAAGCCTGTCCTCTTCACCCGAGGCTCCTCGTTCAGATTCAGcggTCGGACACAGAAGCAGGTGATTGATTATGTGAAGGACTCTGAGTTTAAGAAGATCCCGTTTGAAAGGAAACACAGTAGGGTCCAGCACAGCAGAAGCCGTCCATCTCCGCTGTCTTCCCCTCACTCCCCTCAAGTGCCAAAAGAAAGTGTGAGCGGTGCTCCAGGAGACAGAGCGGAGGTGGACTCTCCGCCCCGCCGTCACTGGAAGGAGTCTGTGAACGCTGAGGACCCTTCAGCCCTGCGGATCAGAGGCAGCCCTTCCATCCAGAGGAACGTGGGACACAGCGAGGACAGGCCAGGTCCTGGGGCAGAACCAGGCCCACCGAGGCAGCCCCACCCAGACCATCTGAACACAGGGGTGGTGTCCAACAGCCCTCATCTCTCCGCCTCCTCCGTTAACTCCCAGGGCATTGTCAACGGTCAGATGCCGGTTGAACTCTGTGGTCACAGTCCGGACGTTCGGCAGCCCTCTCCCCTCACCAGTCCCTTGCTCAACGACGCTGGCATTGTGCGCACCGACGATGAAGAGGAGGTTCGGAGGAAGAGGTTCCCTACCGACAAGGCCTACTTTATCGCCAAGGAGCTGCTGACCACAGAGAGGACCTATCTGAAGGACCTGGAGGTGGTGACTGTGTCTTTTCAGGACTCGGTGGGTAAAGACGAAGCCGTGCCGGACTCCCTGAAGAGCACCATCTTCACCAACTTTGCCCCTCTGTACAGGTTTCAGTCCGTCTTCCTCAGAGAGGTGGAGCAGAGACTGGCTCTATGGGAAGGGTGTTCCAATGCCCACATCAAAGGAGACTACCAGCGCATCGGGGATGTCATGCTGAAGCACCTACAGGGACTGAAGCCACTGACAGCCCACCTCCAGAAGCACTCGGAGGCCCTGGTGGAGCTGGAGAAGGCGTGTCGGGGTTCCCCGCGGCTGGAGGTGCTGGTCCGGGACTTTGAGCTGCAGAAGGTGTGCTACATCCCCCTCAACGTGTTCATCCTCCGGCCCCTGCACCGCCTCATGCATTACAAGCAGATCCTGGAGCGCCTCTGCAAACACTACCCACCCGCACATGTGGACTTCAGGGACTGCAGAGCTGCACTGGCAGACGTGTCAGAGGTGGTGTCCCAGCTCCATGGAAGCATGATCAAGATGGAGAACTTCCAGAAGCTGCTAGAGCTTATGAAGGATTTGATTGGCATCGACAATCTAGTCACTCCAGGGCGGGAGTTCCTAAGGCTAGGCTGTCTCAGTAAGCTGTCTGGAAAAGGTCTCCAGCAACGAATGTTTTTCCTGTTCAATGATGTCCTGTTGTATACGAGTCGAGGGATGACGGCAACGAACCAGTTCAAAGTGCACGGGCAGCTCCCTCTCTATGGCATGACAATCCGGGAGAGCGAGGATGAGTGGGGTGTGCCTCACGCCTTCACCCTGGTTGGGCAGCGCCAGTCAGTAGTGGTAGCAGCAAGttCACTGTCAGAGATGGAGAAGTGGATGGAGGACATTAATATGGCCATTATCCTGGCGGAGAGCATCAACGGTCCTCCGTCTGACCGGCTGGCCAGCAGTCTGACAGATAACAAATCCCTAACAGAGGACTCCTGTGCAGAGGCGGAGTCTGAGGACGACCTGATGGCGTCGCGCACCTCCCTGGAGAGGCAGGCTCCTCACCGTGGTAACACCACGGTGCACGTGTGCTGGCACAGGAACACCAGCGTGTCCATGGTGGACTTTAGCGTAGCCGTGGAGAATCAGCTGTCAGGAAACCTGCTGAGGAAGTTCAAGAACAGCAACGGCTGGCAGAAACTCTGGGTGGTCTTCACCAACTTCAGCCTGTTCTTCTACAAAACCCACGAGGATGACTATCCACTGGCCAGTCTCCCCCTGTTGGGCTACTCTTTCACCATCCCCACTGAGTCTGAAAACATCCACAAGGACTATGTCTTCAAACTGCATTTCAAATCCCACGTCTACTACTTCAGATCTGAGAGCGAGTACAACTTtgacagGTGGATGGAGGTCATTCGCAGCGCCACAGTCTCTGCCAGCCATAACCGCATTCTGAGCCGGAAAGAGTCCCGTCCGTACTGACCCAAAGAGCAGGGGggttctctccctgtctccccgtGCCTCTTCTCCTCACCACAACCTCCCATAGGGTCTGGCCACATACAGCCTCTCTTCAGACTATGACTCCCTCAAGCAGCAAGCTGGAACCACACATTCGCTTGTCTGGAATCTGTTGATTTCCTTTTCTCAATGGATCTGGGACGTGTGTCCATTGAGCAGTGTCCAATGCACAATCTTGGTGCTTATTGATGCGGTGACATGTCCGCTGGTTTAGACtgcaaacagagacagacatttTCAGCATCTTTTTTTATACTCTGCTCTgaatctctctttttttttttgtaggacGTCATTTTATACTGTTTTCTAACGGAGCACATACTATACTTCTGTTTTCACATTCTGTCATTGGATCGTTTTATGGTGGAAACTGATTCTgcggttgttgttgttttttaaacctGTTTTTCATTTAGGATATCACTGCATCCTCAAGGTCTTTTGTCTCCTTGTTCATTTAatgaaaaacgaaacaaaaaaaGCTGCTTTGAAAATCCAACAGCTTGAGTGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCATTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGTCTACCGTTGTCCTAGATTTTACACTGCAAATGTCAAAACAGGGCTACCGTTGTCCTAGATTTTACACTGCACTTTTATTACGTCGGTGGGGAGGAGACTTAACATGTGTCGTTAAACAGGCCAcattaaaatacttttttttaaaaatataaatatatataaatataatatgtCTCTGGAGAATGTGAGTAACCTTGTGAAAACATGGATGATCAGTAAAGATATCCAAATATGTAGTTGTACTATTGACATAACTCTAAACCTACTTGTAAAACGATCAGGTTAGTTACCATCACCACTAACGCCATTATTCGCCAAGCATAGTGAATATTTCTCTTACATGAGGATCTTTGTCGTGCGGATACCGCTGAGTTTCTGAATAATATTATATTCCACCCTTAATAGTGTAAGACTCGATCATAATCTGTGTATTATGAAGGACACTGTAATGGAAAGCTTTAAAGAATATGcgtgaaccaaaatataaactttCAGTTCCAAGCACCATTGCCCTTGTTGGACTAGGCTGCCCGTATGTAAGAGACATTTACGAATTTAAATGAAATGGATATATGCATATGACAGACAGGGTTTATGAAGTGTAGCATTCCAAAGGGTATTGAGGGTGTGCTGCCAGACAACAGAGAGAGCTCTTTGGAAATGAAagcaataaaataaacatttatttgaacATTGTATTGTGAGTTTTATTTGCATGGTCCACAATAGTTAACTTTCAATGTTTTGGACCACTTTCACTTCAATGCGCTCCACAATATTATTAAAATGTTGTTTCTTGTATGACCCATAGGCGGTAACATAAAGCCTGTTCCGTTGTGCTCGTCACATTGGCTACTGCCCCCGAAGTTATTGCACTCATGATTTCCATCTGATGAAAGGAGAAATCGACATAGGCCTAAAAACGAACTTGGTTATTGCCATTTCCTCTTAAAATGTCGAATTTTGAAATGATGTGAACTTAACTACATTTGAATTCTACACGTTTAACGCTTAAATATTCAATTCATTGAACAATTCGTTCCCCTATGGAACATAAAGACCGTGCATGGTATCTTCtttccacttttttttttgttttacccatAAATATAATTGTAAAAATAATTACAGTAGCATACATTCATAGCGTGCTCATATAGAAAGTAAAGTGGGCAGGTCTTTGTACATGAATGAAGTGTGGAGGAGTACAGAATGGTGCCGCCGCTGTTTCCAGAACGGAGCACGCAGATTACGTCATGGATTACCGTTCTCCTAGCAGCAGGATAATATGCTGGCACCAcgattcaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074576 lncRNA upstream 8695 44015255 ~ 44015582 (+) True G1813439
TU2074555 lncRNA upstream 18452 43967883 ~ 44005825 (+) True G1813419
TU2074482 lncRNA upstream 133966 43841540 ~ 43890311 (+) True G1813354
TU2074454 lncRNA upstream 288544 43724577 ~ 43735733 (+) True G1813332
TU2074424 lncRNA upstream 360594 43663195 ~ 43663683 (+) True G1813302
TU2074662 lncRNA downstream 819 44146701 ~ 44146942 (+) True G1813485
TU2074678 lncRNA downstream 9381 44155263 ~ 44155647 (+) True G1813493
TU2074735 lncRNA downstream 77299 44223181 ~ 44224024 (+) True G1813544
TU2074737 lncRNA downstream 79821 44225703 ~ 44226872 (+) True G1813545
TU2074740 lncRNA downstream 83532 44229414 ~ 44230345 (+) True G1813548
XM_036959366.1 mRNA upstream 28902 43992238 ~ 43995375 (+) True LOC110502167
XM_036959365.1 mRNA upstream 45050 43976015 ~ 43979227 (+) True LOC118943610
XM_036959082.1 mRNA upstream 52865 43970398 ~ 43971412 (+) True LOC110501910
XM_036959598.1 mRNA upstream 115457 43907659 ~ 43908820 (+) True LOC118943642
XM_036959597.1 mRNA upstream 171251 43850609 ~ 43853026 (+) True LOC118943641
XM_036959372.1 mRNA downstream 2747 44148629 ~ 44322071 (+) False LOC110502169
XM_036959381.1 mRNA downstream 2747 44148629 ~ 44322071 (+) False LOC110502169
XM_036959382.1 mRNA downstream 2747 44148629 ~ 44322071 (+) False LOC110502169
XM_036959383.1 mRNA downstream 2747 44148629 ~ 44322071 (+) False LOC110502169
XM_036959380.1 mRNA downstream 49043 44194925 ~ 44298345 (+) False LOC110502169
TU2074041 other upstream 873893 43149762 ~ 43150384 (+) True G1812953
TU2073416 other upstream 1288410 42729601 ~ 42735867 (+) True LOC110502157
TU2073435 other upstream 1300163 42723672 ~ 42724114 (+) True G1812428
TU2072843 other upstream 1634990 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 1683885 42329273 ~ 42340392 (+) False LOC110501889
TU2074675 other downstream 172276 44318158 ~ 44320111 (+) True LOC110502169
TU2074792 other downstream 216779 44362661 ~ 44371923 (+) True G1813588
TU2074885 other downstream 352575 44498457 ~ 44508051 (+) True G1813665
TU2074893 other downstream 421006 44566888 ~ 44573921 (+) True LOC110501918
TU2076178 other downstream 964665 45110547 ~ 45111229 (+) True G1814811

Expression Profile