RNA id: TU2074555


Basic Information

Item Value
RNA id TU2074555
length 210
lncRNA type read_through
GC content 0.47
exon number 3
gene id G1813419
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43967883 ~ 44005825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgtcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggTCTgatttccatttcaatattatcgcttgcacagtgc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074482 lncRNA upstream 77572 43841540 ~ 43890311 (+) True G1813354
TU2074454 lncRNA upstream 232150 43724577 ~ 43735733 (+) True G1813332
TU2074424 lncRNA upstream 304200 43663195 ~ 43663683 (+) True G1813302
TU2074377 lncRNA upstream 310748 43586693 ~ 43657135 (+) True G1813258
TU2074326 lncRNA upstream 395042 43550721 ~ 43572841 (+) True LOC110501909
TU2074576 lncRNA downstream 9430 44015255 ~ 44015582 (+) True G1813439
TU2074652 lncRNA downstream 73124 44078949 ~ 44087437 (+) True G1813475
TU2074658 lncRNA downstream 125869 44131694 ~ 44132872 (+) True G1813481
TU2074592 lncRNA downstream 134418 44140243 ~ 44145216 (+) False LOC110502168
TU2074593 lncRNA downstream 138235 44144060 ~ 44145216 (+) True LOC110502168
XM_036959598.1 mRNA upstream 59063 43907659 ~ 43908820 (+) True LOC118943642
XM_036959597.1 mRNA upstream 114857 43850609 ~ 43853026 (+) True LOC118943641
XM_036959361.1 mRNA upstream 323967 43641312 ~ 43643916 (+) True LOC110502162
XM_036959593.1 mRNA upstream 339991 43626441 ~ 43627892 (+) True LOC118943639
XM_021579781.2 mRNA upstream 394936 43550472 ~ 43572947 (+) False LOC110501909
XM_036959364.1 mRNA downstream 18450 44024275 ~ 44144044 (+) False LOC110502168
XM_036959362.1 mRNA downstream 18452 44024277 ~ 44144044 (+) False LOC110502168
XM_036959363.1 mRNA downstream 18452 44024277 ~ 44144044 (+) False LOC110502168
XR_005038840.1 mRNA downstream 18452 44024277 ~ 44145882 (+) False LOC110502168
XM_036959372.1 mRNA downstream 142804 44148629 ~ 44322071 (+) False LOC110502169
TU2074041 other upstream 817499 43149762 ~ 43150384 (+) True G1812953
TU2073416 other upstream 1232016 42729601 ~ 42735867 (+) True LOC110502157
TU2073435 other upstream 1243769 42723672 ~ 42724114 (+) True G1812428
TU2072843 other upstream 1578596 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 1627491 42329273 ~ 42340392 (+) False LOC110501889
TU2074610 other downstream 102419 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 103495 44109320 ~ 44110867 (+) False G1813442
TU2074607 other downstream 103495 44109320 ~ 44110867 (+) False G1813442
TU2074609 other downstream 103495 44109320 ~ 44110867 (+) True G1813442
TU2074675 other downstream 312333 44318158 ~ 44320111 (+) True LOC110502169

Expression Profile