RNA id: TU2072843


Basic Information

Item Value
RNA id TU2072843
length 3411
RNA type TUCP
GC content 0.42
exon number 6
gene id LOC110501889
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42256417 ~ 42389468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTAGACTGCTATATAATTATGCaatatatatatttcccattAATTAATTTTGAGGAGAACGGGAGAAGAGAAAATAACAGAATGCTTTGAGGGGTATTCACTTTGCTCTTGAAGTGGAGGTGTTGAGATCAGTGGCTTTCAGAGTGTAGATTGTGCTCCATTATCATGGAGCAGACACGTCTTTGACAAAGGGTGGTCTGTTTCTTATAGGATGTACATTTTGTTCTATTTTGTCCAATGAAATTGACAGAACGTGCATTCATCAagaatgttttttaaaatctttctTCTGACTGTTGCTTTGGTTTAGCTAGAAAACAGCTACAATTTAATGGACATTATTTGCTCTCAACAATTTATCTTTTGAATTCAGTGTATTGCAGTATGTCTGTCCAAAtgatccatcctctctccctgtccctacaGAGGTGTCTGTGTCGTTTAACAGAGAGTCGTCGGTGACCTACACCTTCCAGGAGCCTTTCTCTGTGATGCAGAATAGGAGCTTCCAGGCCTCCAGTGTCTACAGAGGGAACAGCAGGGCCAGAGAGAACATGGCTTTCATCTTCATGACCACACAGAGCCCTGCCATGCTGCTCACTGTCAGCACCTTCAGCCAGCAGTACATAGCAGTCATCCTGGCACGCAACGGGAGTCTACAGATCTGGTACCATCTCCATGTggacaggaggccagatgtgtTCAGTCCCAGACCCTCCAGCCTGGCAGACGGACACCTCCACCGTATCAGAATCCACCGTGAGGGAAAAGACGTCTACCTACAGATCGACCAGGACATCCACAGGAAGTACACCCTGTCATCTGATGCAGAGTTGATCTTAATCAGATCCTTGACTTTGGGCATAGTCGTCGAGGTGAAAATGTTGATGAGGAAGTGATGCAGGCAGGATCTAAGGGCTTCATTGGCTGCCTGTCGTCCGTCCAGTTCAATCACATGGCTCCACTGAAGGCAGCGCTACTGAACCGTGGCAGCTCATTGGTCAGTGTACGGGGTCACCTGGTGGAGTCTAACTGTGGGGCTCCGGCTGACTCAACAACCTCACACCCACTCTCAGtggtggtgatgaccCGTTTCCTGTACCAGCACCGGCAGGCCCGGAGAGACGCCAGCATCAAGGAGAAGGAGCACCAAACCAACCTGGAAATAGCCTGCCGGAGAGAAGCAGCCTACCAGGCAGAACCAGCCTACAGGACAGAGTGCCACCTCCATGACAGTCATAGCTCCACCCTCAGGGACAACAGGGAGTACTATATCTGACCACAGTGTCCAGCCaagccttctagccatcgccgcttaCCTCTCTTCTGTTTTGTCTAGCTGTCTGCACAGGAGGAGGCAGCCTTTTTCCTCCCTCCTCTGGGGTAGAAATTAAGAATTCCTTCTCCTTTAGGGAACTGTGGGAATATCCTGATGGGGAATTTCTTCCCGTTTCTGTGTAGATACTCCGTAGGACGGGACTTGTAGCTGCAAATATGTTGACCGGCCGGCTCACAAATGGTGGTGATGGGACAGGAAAACAGTGCCATAAGAGATTGAAGCATATGGATATGGTGCAATGGATTTATCCAATGACAGAAATACAAAGAGTCTGGAAAGATTAGAATATTCAATGTTATGGTAAAAGTGGGCAATGTTATGGAAGAGTGGTCAATGTTATGGGAAGAGTGGTCAATGTTATGGGAAGAGTGGTCAATGTTATGGAAGAGTGGTCAATGTTATGGGAAGAGTGGGCAATGTTATGGGAAAAAGCCACAATGGTGTAGATGGCCAAGATTAAACTATCCCACTGTCGTGTGGGGAAGAAATCTCCTGACGCACAGAAACTACACACAGATGCACTTACTCCATTTCAAATACTTACGAAAAGGACGAGAAGTTCAACAGCTTTCACATCTGTGCCATTGATGTAATACAGAGGGTCAATACAGAGTGGGTTGCCTTCAGAGGGCAGGGAGACTATTCAGCCACCATTTTGATGGTAATTACAGTACCGCAGTGCAGTGCTCTGGGAATGGTTGAAAAGGCTCAATGCAAAGGCCTTCTTAGATAACAtaatattaaataacacattGGAATAAGATAAGTATTGTTTTACTGATCTTGATAATGCAGTGATTAATTAAGATTAAATACAAAAAGTTATATATTTAAATTTCATTAAATCCCTAAATAAAGCCATTTAAAAATTACATCAATACAAGAGACAGGTGCCTGGACCGGTTTCCTACATTTTTCTTTGGAAAATTGAAAATCATTGTTCTTTCTGCCCAATGTTCTTGAGGTTTCTATGCCGTAGGCTAGGATGCTTTGTATTGCTGCAAGGAAGAGACTGTAAAAAGAACCCAGCTGACTGGAACATCTGCTAGCTGTCCCCTAGCAAGAGAACCAACCCATCACATCCCACTCAAGTGGCTGCCGGCCAAGGGTTAGAAGAGTCTTCAAAGAGCTGCCATATACAAAGCTTTAGTTGTTCCTCATCTTCTCATAAGCTCTTTGTCTTTTCTTGGTACTTTTCATTGTTTCGTTTGGATTGCTTCCTCAAGCAGCCATTTGTTCTGGCACACCTTTGATCCTGGTCATGCATTGGTGACCATTTTATATCTTATTTCTTATTTGAAGTTTGTAATTCATTGCTTTTGTACTGATTGTCAACAGTATCCCTATGTTAGATCTACATTATAAGGTGATTAGTGTTTACTGGTATTGGATGATGGATGTGGATGCTCAGCTTAGTTTTATTTTCCACCTAAAATGAAGAGGGAAAGTATCATCAGTGCAAAATTACCCAGTTTGACAGTTTAGAAACAATAAAAACAGAGAATGAAAATTCATACGTAAAACTCTTTCATGAGCAACAATTCATATACACACCGTCACAAAATAATAAGATTGGCTGAGGTATTGCCTGAAAACATTTTTCTTTCAAATTAAAGTGTCCTTGAAAGCAAGTTATAATTCACCTCTGAGACTCCTATTTGTACTTGTTGATATTGTGATTACTTTGAGGGCCAATTTTGTATGGCTATAATTGTACAGGTATATTATGAATATATGTTTAATAAAACCAAACATTCTTTTTGAAAAATAATTCATATTTTCCAGATGTTTCCGTGCTACATAACCTCTATCACAACCATTCTCTTTCTTCCGTTCACACACATTTTTTGGGGCTTTGAATACGGTATGTGTGTTTGCATTTGTTGGTACATGTGTGTATAAGCATGTACAGACCAAGGATGGGTGGTGCTGTGTATTCTGATGAAGTAGAAACATTCATTACGTGGTGTGAAACTACGTCCCGTCTTCCTCCAAACGTTGTTATGGTAAATAGGGTACAAAATGGAATCTGACCTAATTCAATCACAAAGCCAGAACATTAAATTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2072823 lncRNA upstream 129887 42242082 ~ 42242419 (+) True G1811873
TU2072692 lncRNA upstream 215339 42156622 ~ 42156967 (+) True G1811749
TU2072660 lncRNA upstream 235359 42136585 ~ 42136947 (+) True G1811717
TU2072652 lncRNA upstream 240037 42132070 ~ 42132269 (+) True G1811709
TU2072639 lncRNA upstream 251431 42120454 ~ 42120875 (+) True G1811696
TU2073085 lncRNA downstream 51332 42440619 ~ 42440843 (+) True G1812123
TU2073088 lncRNA downstream 56180 42445467 ~ 42445698 (+) True G1812126
TU2073090 lncRNA downstream 56960 42446247 ~ 42446575 (+) True G1812128
TU2073100 lncRNA downstream 65311 42454598 ~ 42454867 (+) True G1812137
TU2073101 lncRNA downstream 65800 42455087 ~ 42455344 (+) True G1812138
XM_021579999.2 mRNA upstream 429081 41941197 ~ 41943225 (+) False LOC110502132
XM_021580000.2 mRNA upstream 429081 41941206 ~ 41943225 (+) True LOC110502132
LOC110502150 mRNA upstream 844170 41526982 ~ 41528136 (+) True LOC110502150
XM_036959338.1 mRNA upstream 1009180 41286486 ~ 41363126 (+) False LOC110501885
XM_021579751.2 mRNA downstream 122686 42511973 ~ 42550970 (+) False LOC110501894
XM_021579752.2 mRNA downstream 122687 42511974 ~ 42550970 (+) True LOC110501894
XM_036959347.1 mRNA downstream 225891 42615178 ~ 42685108 (+) False LOC110502156
XM_036959345.1 mRNA downstream 225894 42615181 ~ 42685108 (+) False LOC110502156
XM_036959346.1 mRNA downstream 225894 42615181 ~ 42685108 (+) False LOC110502156
TU2072841 other upstream 31914 42329273 ~ 42340392 (+) False LOC110501889
TU2072842 other upstream 64090 42256555 ~ 42308216 (+) False LOC110501889
TU2071621 other upstream 905957 41464478 ~ 41466349 (+) True G1810740
TU2071418 other upstream 1179814 41189689 ~ 41192492 (+) True G1810553
TU2069833 other upstream 2446911 39924414 ~ 39925395 (+) True G1809107
TU2073435 other downstream 334385 42723672 ~ 42724114 (+) True G1812428
TU2073416 other downstream 340314 42729601 ~ 42735867 (+) True LOC110502157
TU2074041 other downstream 760475 43149762 ~ 43150384 (+) True G1812953
TU2074610 other downstream 1718957 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 1720033 44109320 ~ 44110867 (+) False G1813442

Expression Profile