LOC110501894 (glpc)


Basic Information

Item Value
gene id LOC110501894
gene name glpc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42511973 ~ 42550970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579751.2
GAATCATTTGCTTGTTGCTGGGAGGGGCCTCTCGGTCCATTGGTTGAGCAGAAGAGATCATTGGTTAGGGGATTGAGTTTACAGGCACTGGGGGGAAAAAGTACAGTTCACATGCTGCACAGCACACCCGGTTTTCAGGGCGAGATTTAAAAAAAGGAGTGTTGTCTACAGACAGTATTTGAGTGAACGGTATAAGGTGAAAGATTGGTGAAGAGGGAGGACTGACTGACTTTAAATATTATGTTGCTCTGTTCTGAATAACAGTTTCTTCTTGGAGAGTGGAGTTAGAGAGTGTAGGCAGGAATTCTTGGAAACGTGGTGCTGTGCAGCTCTGGAAATTTGAGATTTGATACAGAGAACCGATCAACACTCCTCCTTCAGGATCCCCCTTTACCCTCCAAATTCcgtctctctattgctctctctctctttctccttctcttcctctccctgtcagCTGTCCCGCTCAATCCCCCTCTCCTGAAGTCCTGCCTGACACCCGCTCTGCTGGACATGGAGAACTCCACGGCTGTGGCCTTTAACGCGACCCCGGACCAAGCGAAACCAGAAGCCATGACACAACTCATGCCAACCAATTACGATGTGGACGATGGATACTTGGATGCCATACTAGGCGCTGTCATTGCTGCTGTGGTCCTGGTGTTGGTGTGCCTGGCGGTTGTAGTAATTCGCTATATGTACCGGCACAAGGGCACCTACCACACCAACGAGGCCAAGGGCACTGAGTTTGCCGAAACAGCGGATGCGGCGCTCCGGGGCGACCCGGCTCTGCAGGATGCCATGGACGAGAGCAAGAAGGAGTACTTTATCTGAGCAGTGGCGTCCCCTGCTGTTTACAGTGGACTTTAGGCTATGGACCCTAGGTATTTTGGGGTTGGAGAATAGAAAGTCTGGAGACTGGATGAAAATGACCTTGCTGTACTTAAGTGAATAGTGCCCTTTCAGTTAAAGATGATATGCTTCTATGGCTAAAGGCCTCTTTTCCTGATGAGACTGGCTAAAGGTCTCTTTTCCTGATGAGACTGGCTAAAGGTCTCTTTTCCTGATGAGACTGGCACTTGATGAGACTCTGATCAGTGACTGAATAGACAACAATTTACCAAAGATGCATcttaataacaataatattaatTCAGTATTCTTCCCCCCCCTACCAGTTTTCCTCTTTAATATATTTGGCATATCACGAAACAGATAGATACATAATATTGACTTTGCTATTAGGAGGCTATATTTGAAGAATTGATTTCCAAAATGTTATATCCAacaatttttcacatttgtgttttttcatcagaaatgattgcttatacatgtgtgtgtaaaatattactgttactGATGTTTTTATTCATTGATTTTAGATGTGTATAAAAATGTGTTTCTTTTTGCTAAACGCTACATATCAATTGTTTAGCTAGAATGGAGTGTTCATATCCTGtttatttgactgtgatatgtggttgtgtcacctagctatcttaaggttaatgcacttactgtaagttgctctgcatAAGAGACTCTGCCTAATTActtaaatgtcaaatgtaaacatatggaattgttttaagatgtcataccatggatcatttatcTATTGGATTTAAATTTTTAGGATCCCTGTAGGTATCCCCCCAAAAatatgttaaaaaaatatatgatacAATATTGAATTTGATCTTTACTACTACAGCCCATGGAGACTCATTAAATAACATCATCATCAATTGcaaa
>XM_021579752.2
AATCATTTGCTTGTTGCTGGGAGGGGCCTCTCGGTCCATTGGTTGAGCAGAAGAGATCATTGGTTAGGGGATTGAGTTTACAGGCACTGGGGGGAAAAAGTACAGTTCACATGCTGCACAGCACACCCGGTTTTCAGGGCGAGATTTAAAAAAAGGAGTGTTGTCTACAGACAGTATTTGAGTGAACGGTATAAGGTGAAAGATTGGTGAAGAGGGAGGACTGACTGACTTTAAATATTATGTTGCTCTGTTCTGAATAACAGTTTCTTCTTGGAGAGTGGAGTTAGAGAGTGTAGGCAGGAATTCTTGGAAACGTGGTGCTGTGCAGCTCTGGAAATTTGCTGTCCCGCTCAATCCCCCTCTCCTGAAGTCCTGCCTGACACCCGCTCTGCTGGACATGGAGAACTCCACGGCTGTGGCCTTTAACGCGACCCCGGACCAAGCGAAACCAGAAGCCATGACACAACTCATGCCAACCAATTACGATGTGGACGATGGATACTTGGATGCCATACTAGGCGCTGTCATTGCTGCTGTGGTCCTGGTGTTGGTGTGCCTGGCGGTTGTAGTAATTCGCTATATGTACCGGCACAAGGGCACCTACCACACCAACGAGGCCAAGGGCACTGAGTTTGCCGAAACAGCGGATGCGGCGCTCCGGGGCGACCCGGCTCTGCAGGATGCCATGGACGAGAGCAAGAAGGAGTACTTTATCTGAGCAGTGGCGTCCCCTGCTGTTTACAGTGGACTTTAGGCTATGGACCCTAGGTATTTTGGGGTTGGAGAATAGAAAGTCTGGAGACTGGATGAAAATGACCTTGCTGTACTTAAGTGAATAGTGCCCTTTCAGTTAAAGATGATATGCTTCTATGGCTAAAGGCCTCTTTTCCTGATGAGACTGGCTAAAGGTCTCTTTTCCTGATGAGACTGGCTAAAGGTCTCTTTTCCTGATGAGACTGGCACTTGATGAGACTCTGATCAGTGACTGAATAGACAACAATTTACCAAAGATGCATcttaataacaataatattaatTCAGTATTCTTCCCCCCCCTACCAGTTTTCCTCTTTAATATATTTGGCATATCACGAAACAGATAGATACATAATATTGACTTTGCTATTAGGAGGCTATATTTGAAGAATTGATTTCCAAAATGTTATATCCAacaatttttcacatttgtgttttttcatcagaaatgattgcttatacatgtgtgtgtaaaatattactgttactGATGTTTTTATTCATTGATTTTAGATGTGTATAAAAATGTGTTTCTTTTTGCTAAACGCTACATATCAATTGTTTAGCTAGAATGGAGTGTTCATATCCTGtttatttgactgtgatatgtggttgtgtcacctagctatcttaaggttaatgcacttactgtaagttgctctgcatAAGAGACTCTGCCTAATTActtaaatgtcaaatgtaaacatatggaattgttttaagatgtcataccatggatcatttatcTATTGGATTTAAATTTTTAGGATCCCTGTAGGTATCCCCCCAAAAatatgttaaaaaaatatatgatacAATATTGAATTTGATCTTTACTACTACAGCCCATGGAGACTCATTAAATAACATCATCATCAATTGcaaa

Function

symbol description
glpc glycerol-3-phosphate dehydrogenase subunit C

NR:

description
Glycophorin-C

GO: NA

KEGG:

id description
K06576 GYPC, CD236; glycophorin C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579751.2 False 1758 mRNA 0.42 4 42511973 42550970
XM_021579752.2 True 1642 mRNA 0.42 4 42511974 42550970

Neighbor

gene id symbol gene type direction distance location
LOC110501889 LOC106582433 coding upstream 122505 42256417 ~ 42389468 (+)
LOC110502132 clm8 coding upstream 568748 41941197 ~ 41943225 (+)
LOC110502150 NA coding upstream 983837 41526982 ~ 41528136 (+)
LOC110501885 LOC106582417 coding upstream 1148847 41286486 ~ 41363126 (+)
LOC110501877 LOC106582405 coding upstream 1753747 40745882 ~ 40758226 (+)
LOC110502156 ahr2a coding downstream 64208 42615178 ~ 42685108 (+)
LOC110502157 LOC106582435 coding downstream 137245 42688215 ~ 42735867 (+)
LOC110501901 LOC106582440 coding downstream 333741 42884711 ~ 43039681 (+)
LOC110501905 LOC106582444 coding downstream 662870 43213840 ~ 43226393 (+)
LOC110501904 LOC106582430 coding downstream 679454 43230424 ~ 43232133 (+)
G1812177 NA non-coding upstream 18057 42493682 ~ 42493916 (+)
G1812167 NA non-coding upstream 32666 42478867 ~ 42479307 (+)
G1812159 NA non-coding upstream 33536 42478129 ~ 42478437 (+)
G1812158 NA non-coding upstream 46274 42465380 ~ 42465699 (+)
G1812150 NA non-coding upstream 50627 42461114 ~ 42461346 (+)
G1812227 NA non-coding downstream 19039 42570009 ~ 42572303 (+)
G1812228 NA non-coding downstream 21858 42572828 ~ 42573035 (+)
G1812233 NA non-coding downstream 28954 42579924 ~ 42580254 (+)
G1812243 NA non-coding downstream 40869 42591839 ~ 42592110 (+)
G1812242 NA non-coding downstream 51127 42602097 ~ 42603430 (+)
G1810740 NA other upstream 1045624 41464478 ~ 41466349 (+)
G1810553 NA other upstream 1319481 41189689 ~ 41192492 (+)
G1809107 NA other upstream 2586578 39924414 ~ 39925395 (+)
G1808787 NA other upstream 2817105 39693913 ~ 39694868 (+)
G1812428 NA other downstream 172702 42723672 ~ 42724114 (+)
G1812953 NA other downstream 598792 43149762 ~ 43150384 (+)
G1813442 NA other downstream 1557274 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 1767188 44148629 ~ 44324651 (+)

Expression


Co-expression Network