RNA id: XM_021579751.2


Basic Information

Item Value
RNA id XM_021579751.2
length 1758
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110501894
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42511973 ~ 42550970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCATTTGCTTGTTGCTGGGAGGGGCCTCTCGGTCCATTGGTTGAGCAGAAGAGATCATTGGTTAGGGGATTGAGTTTACAGGCACTGGGGGGAAAAAGTACAGTTCACATGCTGCACAGCACACCCGGTTTTCAGGGCGAGATTTAAAAAAAGGAGTGTTGTCTACAGACAGTATTTGAGTGAACGGTATAAGGTGAAAGATTGGTGAAGAGGGAGGACTGACTGACTTTAAATATTATGTTGCTCTGTTCTGAATAACAGTTTCTTCTTGGAGAGTGGAGTTAGAGAGTGTAGGCAGGAATTCTTGGAAACGTGGTGCTGTGCAGCTCTGGAAATTTGAGATTTGATACAGAGAACCGATCAACACTCCTCCTTCAGGATCCCCCTTTACCCTCCAAATTCcgtctctctattgctctctctctctttctccttctcttcctctccctgtcagCTGTCCCGCTCAATCCCCCTCTCCTGAAGTCCTGCCTGACACCCGCTCTGCTGGACATGGAGAACTCCACGGCTGTGGCCTTTAACGCGACCCCGGACCAAGCGAAACCAGAAGCCATGACACAACTCATGCCAACCAATTACGATGTGGACGATGGATACTTGGATGCCATACTAGGCGCTGTCATTGCTGCTGTGGTCCTGGTGTTGGTGTGCCTGGCGGTTGTAGTAATTCGCTATATGTACCGGCACAAGGGCACCTACCACACCAACGAGGCCAAGGGCACTGAGTTTGCCGAAACAGCGGATGCGGCGCTCCGGGGCGACCCGGCTCTGCAGGATGCCATGGACGAGAGCAAGAAGGAGTACTTTATCTGAGCAGTGGCGTCCCCTGCTGTTTACAGTGGACTTTAGGCTATGGACCCTAGGTATTTTGGGGTTGGAGAATAGAAAGTCTGGAGACTGGATGAAAATGACCTTGCTGTACTTAAGTGAATAGTGCCCTTTCAGTTAAAGATGATATGCTTCTATGGCTAAAGGCCTCTTTTCCTGATGAGACTGGCTAAAGGTCTCTTTTCCTGATGAGACTGGCTAAAGGTCTCTTTTCCTGATGAGACTGGCACTTGATGAGACTCTGATCAGTGACTGAATAGACAACAATTTACCAAAGATGCATcttaataacaataatattaatTCAGTATTCTTCCCCCCCCTACCAGTTTTCCTCTTTAATATATTTGGCATATCACGAAACAGATAGATACATAATATTGACTTTGCTATTAGGAGGCTATATTTGAAGAATTGATTTCCAAAATGTTATATCCAacaatttttcacatttgtgttttttcatcagaaatgattgcttatacatgtgtgtgtaaaatattactgttactGATGTTTTTATTCATTGATTTTAGATGTGTATAAAAATGTGTTTCTTTTTGCTAAACGCTACATATCAATTGTTTAGCTAGAATGGAGTGTTCATATCCTGtttatttgactgtgatatgtggttgtgtcacctagctatcttaaggttaatgcacttactgtaagttgctctgcatAAGAGACTCTGCCTAATTActtaaatgtcaaatgtaaacatatggaattgttttaagatgtcataccatggatcatttatcTATTGGATTTAAATTTTTAGGATCCCTGTAGGTATCCCCCCAAAAatatgttaaaaaaatatatgatacAATATTGAATTTGATCTTTACTACTACAGCCCATGGAGACTCATTAAATAACATCATCATCAATTGcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073140 lncRNA upstream 18057 42493682 ~ 42493916 (+) True G1812177
TU2073130 lncRNA upstream 32666 42478867 ~ 42479307 (+) True G1812167
TU2073122 lncRNA upstream 33536 42478129 ~ 42478437 (+) True G1812159
TU2073121 lncRNA upstream 46274 42465380 ~ 42465699 (+) True G1812158
TU2073113 lncRNA upstream 50627 42461114 ~ 42461346 (+) True G1812150
TU2073192 lncRNA downstream 19039 42570009 ~ 42572303 (+) True G1812227
TU2073193 lncRNA downstream 21858 42572828 ~ 42573035 (+) True G1812228
TU2073198 lncRNA downstream 28954 42579924 ~ 42580254 (+) True G1812233
TU2073210 lncRNA downstream 40869 42591839 ~ 42592110 (+) True G1812243
TU2073209 lncRNA downstream 51127 42602097 ~ 42603430 (+) True G1812242
XM_021579744.2 mRNA upstream 122505 42256417 ~ 42389468 (+) False LOC110501889
XM_021579999.2 mRNA upstream 568748 41941197 ~ 41943225 (+) False LOC110502132
XM_021580000.2 mRNA upstream 568748 41941206 ~ 41943225 (+) True LOC110502132
LOC110502150 mRNA upstream 983837 41526982 ~ 41528136 (+) True LOC110502150
XM_036959338.1 mRNA upstream 1148847 41286486 ~ 41363126 (+) False LOC110501885
XM_036959347.1 mRNA downstream 64208 42615178 ~ 42685108 (+) False LOC110502156
XM_036959345.1 mRNA downstream 64211 42615181 ~ 42685108 (+) False LOC110502156
XM_036959346.1 mRNA downstream 64211 42615181 ~ 42685108 (+) False LOC110502156
XM_036959348.1 mRNA downstream 137245 42688215 ~ 42734562 (+) False LOC110502157
XM_036959349.1 mRNA downstream 137245 42688215 ~ 42734562 (+) False LOC110502157
TU2072843 other upstream 122686 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 171581 42329273 ~ 42340392 (+) False LOC110501889
TU2072842 other upstream 203757 42256555 ~ 42308216 (+) False LOC110501889
TU2071621 other upstream 1045624 41464478 ~ 41466349 (+) True G1810740
TU2071418 other upstream 1319481 41189689 ~ 41192492 (+) True G1810553
TU2073435 other downstream 172702 42723672 ~ 42724114 (+) True G1812428
TU2073416 other downstream 178631 42729601 ~ 42735867 (+) True LOC110502157
TU2074041 other downstream 598792 43149762 ~ 43150384 (+) True G1812953
TU2074610 other downstream 1557274 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 1558350 44109320 ~ 44110867 (+) False G1813442

Expression Profile