RNA id: TU2071621


Basic Information

Item Value
RNA id TU2071621
length 1726
RNA type TUCP
GC content 0.44
exon number 3
gene id G1810740
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41464478 ~ 41466349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgtgtgtgtttctgtagttagctaaggagggagagagtgaaagaaaataACTGAAAAACAAGACAACCCTGAAAACTGCAACAGTCAGTAACAGatctacagtcagtaacacatctacagtcagtaacacatctATAGTCAGTAGCACatctacagtcagtaacacatcttcagtcagtaacacatctacagtcagtaacacatctATAGTCAGTAACACatctacagtcagtaacacatctacagtcagtaacacatctacagtcagtaacacatctATAGTCAGTAACATATACACAGTCGGTAACAATCAGTTACACAtctacagtcagtaacagtcagtaacaaatctacagtcagtaacagtcagtaacagtcagtaacacctctacagtcagtagcagtccgtaacagtcagtaacacatctacagtcagtaacagtcagtaacacatctacagtcagtaacagtcagtaacacatctacagtcagtaacagtcagtaagaCATCTACATCCAGTAACACAtctacagtcagtaacagtccgtaacagtcagtaacacatcTACAGTCAGTACCAGTCAGTAACACAtctacagtcagtaacagtcagtaacacatctacagtcagtagcagtccgtaacagtcagtaacacatctacagtcagtaacagtcagtaacacatctacagtcagtaacagtcagtaacacatctacagacagtaacagtcagtaacacatcTACATCCAGTAACACAtctacagtcagtaacagtcagtaacacatctacagtcagtaacacatgtccggtcacaacttgcagacttgttttcgagTTGATGTTCGTTTttttgccaacctgttttgctacctgacaaatttacggtttttactttttaattaccgtttatatttttgtttttttcctcctcaactttttcactccggacgctttatctggacacgattcgtcaggacctccaacagccgaagctaagtagtaacattaacatgatgccttctaattgcagtcgctgtactcgccttactgcgaggatagctgtgctacaagcccagcttcagacgcaatcgttaggcaagagtaatttcagtgtaggaaaggatgaaacagcgtctgtgccaccagtaagtacagatagtagtataaatctcctggcacagtccccgcagccggacaactttctcacggtttctggaaggaaatgctgtaggaacgctcaaccggtgtcgctcattcagccgacagaaactttcaaccggttttccccattaagcagcgagtcggagtcagaggccgagccttctctggtctctactcctcccgttacggggtctgagacgccgaagcttcccaccattagctctgacaaattgaaaactctagtcattggcgactccattacccgcagtattagacttaaaacgaatcatccagcgatcatacactgtttaccggggggcagggctaccgacgttaaggctaatctgaagatggtgctggctaaagctaaaactggcgagtgtagagagtatagagatattgttatccacgtcggcaccaacgatgttaggatgaaacagtcagagatcaccaagcgcaacatagcttctgcgtgtaaatcagctagaaagatgtgtcggcatcgagtaattgtctctggccccctcccagttagcgGGAGTGATGAgccctacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071593 lncRNA upstream 33697 41430376 ~ 41430781 (+) True G1810717
TU2071503 lncRNA upstream 38438 41425717 ~ 41426040 (+) True G1810630
TU2071582 lncRNA upstream 56526 41407730 ~ 41407952 (+) True G1810706
TU2071581 lncRNA upstream 58834 41405375 ~ 41405644 (+) True G1810705
TU2071578 lncRNA upstream 61386 41402889 ~ 41403092 (+) True G1810702
TU2071636 lncRNA downstream 39577 41505926 ~ 41506174 (+) True G1810755
TU2071902 lncRNA downstream 96579 41562928 ~ 41567353 (+) True G1811000
TU2071921 lncRNA downstream 116291 41582640 ~ 41582943 (+) True G1811018
TU2071940 lncRNA downstream 135110 41601459 ~ 41601671 (+) True G1811037
TU2071953 lncRNA downstream 146206 41612555 ~ 41624781 (+) False G1811047
XM_036959336.1 mRNA upstream 101352 41286486 ~ 41363126 (+) False LOC110501885
XM_036959337.1 mRNA upstream 101352 41286486 ~ 41363126 (+) False LOC110501885
XM_036959338.1 mRNA upstream 101352 41286486 ~ 41363126 (+) False LOC110501885
XM_036959339.1 mRNA upstream 101352 41342272 ~ 41363126 (+) True LOC110501885
XM_036959341.1 mRNA upstream 103381 41286486 ~ 41361097 (+) False LOC110501885
LOC110502150 mRNA downstream 60633 41526982 ~ 41528136 (+) True LOC110502150
XM_021579999.2 mRNA downstream 474848 41941197 ~ 41943225 (+) False LOC110502132
XM_021580000.2 mRNA downstream 474857 41941206 ~ 41943225 (+) True LOC110502132
XM_021579744.2 mRNA downstream 790068 42256417 ~ 42389468 (+) False LOC110501889
XM_021579751.2 mRNA downstream 1045624 42511973 ~ 42550970 (+) False LOC110501894
TU2071418 other upstream 271986 41189689 ~ 41192492 (+) True G1810553
TU2069833 other upstream 1539083 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 1769610 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 2313145 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 2601342 38862740 ~ 38863136 (+) True G1807566
TU2072842 other downstream 790206 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 862924 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 905957 42372306 ~ 42389287 (+) True LOC110501889
TU2073435 other downstream 1257323 42723672 ~ 42724114 (+) True G1812428
TU2073416 other downstream 1263252 42729601 ~ 42735867 (+) True LOC110502157

Expression Profile