RNA id: XM_036959346.1


Basic Information

Item Value
RNA id XM_036959346.1
length 8201
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110502156
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42615178 ~ 42685108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGAAAACGCCCCATGCCAGGAACGATAGACACATTTTACCTGCTGCAAGAGAGCAGTTCCGAAAGTGTTCCGAGCGTTGGGTTGTATACAGTAAAATCTACCCCTTTAGAATAACTATTTTGTGGTTTGTTTGAGGGTCTCTGGAGAGACTTCTCATGAACAAAAAGAACAGGAAGGGAAATTTGCTGTGATCACGCACATATGATTTACTCTGTTGATCGGGGGAACTTTCCGAAACTTGCTTCATCCCCCAAACACTTCTGGATTTACGCCGCACGTCTATTACGGTCGACTTTGCCAGTGACTTTGACCGCTTGGGTCTGTCAAGTTAACGTCGCGGGGGATCTGCGTTACGGAGAGACCGCTCTATTTGAAGGGATTCACGCATGTCTGGATATTAACTTCCCTTGTTAATTTGAGAACGGTCTCTGAGGAAGACAGTGGATGTTATTGTGTTCGTGTTTTTGAACATTTTGTACCAACTAATACAGCAGAAGCGTCAACATGTTGAGTAACACTGGAGTCTATGCTGTCAAGAAGCGGAAGAAGCCCGTTCAAAAAACCAAGAAATCTCCTGCTCCAGATGTGGTCAAGTCGAACCCATCCAAACGACACCGGGATCGGCTGAATGGGGAGCTGGACAGGCTGACAGGCCTCCTACCATTCCCTGAGGATGTGCGCTCTCGCCTGGACAAACTCTCTGTGCTACGCATCAGCGTCGGCTACCTGAAGGTGAAGAGCTTCTTCAAAACAACCATGAAGAAAAGCAGTGTCCTGTTTCCTGGGGGGGATGACCTGAACATGAATGGGATGAACGCCCCAACCTTCTCCGAGGGGGACCTACTTCTCCAGGCTCTGAATGGCTTTGTGCTGGTGGTCACAGCTGAGGGACATGTGTTCTATTCCTCTCCTACTATCCAAGACTACCTGGGCTTCCATCAGtcagaCGTGGTCCACCAGAGTGTGTTTGAGCTGATCCACACAGACGACAGAGCCACGTTCAGACGACAGCTTCACTTTGCCCTCAACCCCAAGCCCTTTGACCCAGAGCAGGGAGGAGATGGCATGGCGAGCAGCAGTGACATCACCAGGAACATCGTGACCTATAACCCTGAGCAGCTCCCACCAGAGAACTCCTCCTTCCTGGAGAGGAACTTCGTGTGTCGGTTCCGCTGCCTCCTGGACAACTCCTCTGGCTTCCTGGCTCTGAACTTCCAGGGGCGTTTGAAGTTCCTCCATTGCCAGAGCATGCTGGGGGATGACGGGACGCACAGCCAGCCCAGGTTGGGCCTGTTCACCATCGCCACCCCTGTCCACACCCCGTCCATATTGGAGATCAGAAACAAGACGATCTTCTTCCAGACCAAACACAAGCTTGACTTCACCCCCACGGGTGTCGATGCCAGGGGGAAGGTTGTCCTGGGATACTCAGAGATTGAGTTGTGTATGAGAGGCTCTGGGTATCAGTTCATCCACGCAGCTGATATGATGTACTGTGCAGATAGCCATGTCAGAATGATTAAGACAGGAGAGAGTGGTCTGACCACGTTCAGACTGCTGCAGAAGACTGGGTGCTGGGTCTGGGTCCAGGCCAATGCCAGGCTTGTCTACAAAGGAGGAAGACCTGACTTCATCATCGCACGCCAGAGAGCTTTACTTAATTCTGAGGGAGAGGAGAATCTACGCCAGAGGAAGATGCAGCTGCCCTTCAGCTTCACCACCGGGGAGGCCCTGCTGTACGAGACCGGCCCCACTCTGGATGCCACGGAGTTCCAAaccaaccccccaaaaatctgcaAGGTGGAGTCTCTGGACCCCCAGTCTCTACTGGGCTCTTTACTAAAGCAGGACGAATCCGTCTACACCCAGCCCCAGGAGCCTCAGCTACCCATAGACCAGGTGTTCATGGACAGCCGAGCGCTCACCAACGTGGCCTGTAACTCCTGGCAGAGTAGCGTGGAGCCCCAGGGGCCCGACGGGGTTGATGATGGTGATAGCCCCAGGGAGGTCAAGCACGAGGGGGCGTTGGTAGCCATGATCGATGCCCTGGAGAAGATGGCGCAGGATGGGGACCTGTGTGCGGCTCTGCAGGGGATGGACGTGGGTACGGCGGAGCTGATGGAGTGGGAGAACACCCTCCTCAGGCTGAGCCAGAACTCCAATGGGACCGGGAGCGGGGACACCTCCCTAGAGCTGGATGACATCATGACCAACGACATCTTCTCTTACGTGGAGGAAGCCTTGTTCAAGGAGAGCAGCGAGGGGAGCGGTAACCAGCCCAACTGCTCTACCATGGTCAACAACGACCCTAACCTGTTCACAGGGGTGCTCGACAACAACAACCAGGGTGGACCATTCACAGGAGTGGTCAGCCCTACAGGTGCCGGACAGTGCAAGCCCGGGTTGCTTGACAAATTCAGCTTTGTCCAAAATGGCTCCCCAGGGAACGATCTAAATGGTATCAGCCACAGTCAGGTAACAGGCAACAGAGTAGTTGGTTTGGCAGGACAGAACCAGGCAGGACAGAACCAGGGAGGACAGAACCAGGCAGGACCACAGCAGGTGTTCAAGAGCACCCAGAGGCTCTCCCACTTCGGCCCCCAGATTCCTCAGACGGGCCTGAATATCCCCATCCTGCAGCAGCTACAGCTCAACGACATCTTCACCCCCTCTCTGGAGCTCCCCGAGCTCAGTAACCCACATAGCTCAGGCCAGAATGAGTCTGTCACGTTAAGCACTAGCATGGCTGGATCCTGTGCTCAAGCACCAAACAACCACATGGGAAGCCCTCAGATCATCGCTGGCCAGGTCCAATCTAACCAGCCACCTCCACAGTGTTTCCCTCATAATGGCTTGCCAGCTGCAATGGAACCAAACAGACCAGAGGAGATCTCTGTTCCACAGTCCAACCATCTACCACCTATTCTGGTGGATGCTTGGGCATCTTTGATTCCCAGTAATGGCTTTGTTTCACCCCAGATTGCCTGCAGTGCACCATTTCAGTCACTAAAAACCCAGAAAGTGCAGCAGTGGCCCCAGAACCAGCAGCATCAGCTACCACCACCCGCCAGCACAATGAAAAATGGACACCAATTAATCCCAGACTGTCACAGTCAAGCCACAGAGACCCAAAGAGTCCCTCTCACAGGCCTTTGGCCACAGAACACCAACGGATTGTACCACCAACCCCAGCAGAGGCGATTGGCCAACGGCCAGCCTGCTCCATCCAGCAGCTGTATGTTTGAGAACgtctcaccccccctccccaacAGAAACAGCCACGTGGATGGCACCATTCTGCCTCCCCCCTTGTCTGTATGCCAGAGGAGGATGGTGGACCCCCAGGACCAGAGCTACTTGCAGTGGGGCCCCAGTGAGCCGGTGGTGGACACGTCAGCCATCATCCAGGACAACACCGGAATCAGCTTCCCGGCTCGCCCGCTTGTGGCCAACATCACCACCCCCGAGAGCCTACTGGCCATGCAGCAGTACCTTTCTGGACGCAACAGAGTCGGACAGACACAGATCCCAAGCCTCTGTGTAGTAGACAGCAATGGAACATTCTCCTCATCCCCACTTGTCAATGGAACATTCTCCTCATCCCCACTTGTCAATGGAACATTCTCCTCATCCCCACTTGTCAATGGAACATTCTCCTCATCCCCACTTGTCAATGGAACATTCTCCTCAGCCCCACTTGTCAATGGAACCATGTGCTTTACAGACCACAACCAAACCAACTATTGCGACTTCTAAACACGAGTCACACGTTACTCTGTAAACATTATGGACAAAAAGAGGAGGAAGCCATCCATGGATctgttcatccatccatccatccgtacACATTCAAAGATAACACACTGCCTTAAGAGCTGCCTCAGGGAGGGTGTCGTGATGACAAGCCATCCCCTAGTCAGACACACCATTCATCTCCGCATATCAGTGTTTACAGGAAATACAAGGACTCTTTTGATTAAGCACTTGTCACTTCTGTCAGCAATGGAACAAAAAAGCAGCAACTTTACATGGAACtggttttctttctttttttgttgggttgtcttctgtttttgtttgttgttgcctTGTCTTTGGTTTTATTACTGTGGAAAAACAGTATCTGTCACAACTTCAATGATATGAATGAAGTTTGAATCCTCACCGGTGAATTTGGCTTGTGTTATAATGGCTTTTTAGGGTCATGCCCAATTCCCAAAATGATTTATAATATATTAATGAAGCAGGCCATATTCATTTCTTTTTACGTTTGTTTCTTCTTACATTATAGTTGGATGGTGACAGGACACCATTCAAGTTTTCACTCGtggagaaacaaacaaaaaactgaTATTGTACTCAGAGATTAAAAATAAAGGCATAGCATCCTCAATTTATATATGGagtgtagggttgcaaaattctgtgaACTTTAGATACATTTCCTAATTTTTACAAAATCCCAGTTGGAGAATTCCTTGAATCAGGAAtcagggaataagcaggaaatccagaatcctccaaccagggaaaaccagggaatttattgaatgTTCCTGCAACCCTAATGAAGTGTAAATACAGAAATGGCCTCTATATTATTATAAAAATATTATTGTTTTTATTATGTGAGTGTGTTATGGCTGTGATGAATATGACTGTGTGCACACGGGGTGTGTTCCTGTTTGTGTTTGCTTATTCTGAAGAATGAATGAAGCAGTGTACAAATAGAATTTCTGAGGAAAAAGCAACTTATTTCATTGAAATGTCTGCATTGGTTGCAGAGTAGGCTATCAAAAACCAAATGATGTGCTTTCAGATTGTACTCCTTGTAATGCTATTGGTATCCAAATGTCATTACAATTTAACAATAGTCTGTTAAAGTACGTTGATAATGCTATATCAATAGTATTCAATCCATTTATagttgttttctttgttttatctAAACTTCACTGAGCCATATGCTAACTTGTGgtaatttttttactttagtttttcGTTCATAATATCATCTGTGGAGGAAGGTGTACTGCATGTTAAGGAGCCTCAGGAGACGTACAGTCGCTAGTGAAAGTCGACACACCacttgcacagtcttcacattttgctacCTTAAAATCTGAAAAGGGATTTTTTTCCTACCGATCTAAACAAtctactccacattttcaaagtgaaagaaaaatgtataaaaaagaaATACGAAACAAAGATGTTTTGATCTTCGCAGCCGACGGGTTAATACTTGATGGAAGACCCCTTTTTGTTGTAATTTTTCTCTCCCCAAATCCATGGTATCCAATGTGTAGTTagaatcttgtctcattgctgcaactcccctatggactcgggagaggtaaaggttgagagccatgcgtcctccaaaacacgaccctgccaggccgcactgcttcttgacacactgctcgcttaacccggaagccaaccgcaccaatgtgtcggaggaaacaccgtccaactgACGACCGAtgtcagcttgcaggtgcccgACCTGCCACAAGGAGGTCGGTagagcacgatgagacaaggaaatcccagccggccaaaccttccccgaacccggacgacactggaccaaaccctcccctaatccggatGACGCTAGGCAAATTGTGCGCTgcttcatgggtctcccggtcacggctggcTGTGGCACAGCCTGGGAACGAAACCgaggctgtagtgacgcctcagcATTGCAATGCTgttccttagaccactgcaccacttgggagtctccggtggaagcacctttgatagtcattacagctgtgaattaTTTTGAATAAGATTATACCAACTTTTAGAGAAACATATTTTCATTGTTTATGTCAAAATTGCTTAAGGTCAGTAAATTTGTTCAGGAGTCATTGATCGGCAGCCATATTCAAACCTTGTCTCTGATTGTCAAGCAAATTTAAGTCAAGGCTAAGAAACACTCAAGTACACTCAAGCCATTCTGGTGTCTTTGGCATTAACATTTTTGTAACTGTGCCACTGAAAATAAAACTCTATTCCAGGGTTTTCCTCAACCTTTTACCTAGGCTTTGCTCTTTTCATGTTTcttttgatcctgacaaactcctCAGTCCCTACTAGTGAcaggcatacccataacatgatgcttccaccacaatacttgaaaatacagaCGGTTTATATTGGATTTGATAAAAGCCTGTAGTTTTTttaatttaggccaaaaagtgatTTATTTGCCGTGTtgtcttgcagtattactttagagcCTTGTTGCAACCAGAATGGATGATTTGTAATGGATATTGTAACACAGGCTTCCTTCTCTTCACCTTATCATACAGGCCAGTAATGTGGAGTGAATGTAATGTCGTTGATCctctgtattttcaagtattgtggtggcagcatcatgttatgggtatgcttgtcatggCAGTGgctggggagtttgtcaggatcaaaataaatataaaaggagcaaagcccaggtaaaaagCTAGAGGAAAACCAGCCTCAGTCTTCTgaatacctaaccctgggatagaTTTTAACATTTCTGCCATGACAAGTCAaatgccaaagacacaccagTATGCCTTTCCAATAGGTCTTGAGTGGTCCTGAATggtccagtctcagtcctgacttaaaCCTGCTCAAATCAGAAACAAGATTTGAATATTGCTGCGCATCAATGATTCCCACCTCAATGTACTGtgcttgagcaattttgacaaaaacaatggatatgCAGTATGTTGCCCTAAGAGTAGTAGAATCTTATTCACAGCTTTAATGGctggcaaaggtgcttccaccaatTACCAACTCTGTGATGTGAAGACATACGCAATCAAGACATCTTTGTTTTATTTGTAATTAATTAGGAACATTTtctatatttattttttcaatttgAAAACGTGGCGTAGGTTGTGTACATCAATAGGAAAAAGTGTGTAATGCAATTTTTAGATAACATTTTAATGTGATGGAGTGTGcagactttcactaggcactgtagGTCCTAGAAgtctagtgtagtaaccatggttACTATAGACATGGGACTGGAAGTAGAACTTCCCACGAGTCCACATGTTGATCAGCATATTCGACAAATGGAACTTCCCATTTAGTCCCATGTCAGTTGATGATTTACAGTAACATGGCAGGTCCTCCCGTTGTAAAAGCCCCCTGACACTGAAGTCTCCCGTCATCACTCCGACTCCTCCCTCAAAGGCATCTGAGGCTAAATCAATATGGCTGCCCACCTTTTATTTCCCTTGACCTATTTCCTCATTCTGCTCATATGAAAAGACAAGGCAGGTTTCCGCCATATTCCCCTATATGGCGGAAACTAAACCCGGCCAACTAGAGGGCCTCTCCTGCCAAACTGCTCTCACTGATTCAGTTCTCTCAGCTCAATAAGGCAGAGGAAGTTACACATAGCAAAGGGAGCTGTTATATGTATTGGGTTTATTCACATTTAGCTTTGCTTTTGAATTATATTTAGCAACTTTTCTCATGCGTTTTGCTTCACCGAGCTGATTTATAATATAATGGGTGGCAAGTTTTCAAAGCGCCTGCCTTGAAATGTTGATAAAGTTCCTTGTATCAAAGTTGATATGAAAGAAAGGGAAGGGTATACATTATATATCACCTCTAGGGTTGCAAAACTCCAGGAACTTTCAATACATttcctggttttccagaaattgtggttggaggattccagatttcctgcttattccttcctgattccgggaatcctccaactgggatttcagggaaaaacctgggaatttattgaaagttcccagaattttGCCACCCTAATCCACACCCTGCTGTATATCTATTCGTTAAGCTTACTCTTCAACGGTCTCCGACATCAGGCAGTGGCAGAGTTCAGCATCAATATATTAtgaatatttcagttttttgcaTTTGTTTGTCGTATGTTTGGTTATTTCATGTTGTTATTATGTCTCGTGGCCTTAAAACATCTGTTAGACATTTGTTCTCCTTGGAAATATTTGTCTCCACATAAATATTTAATTTAGTGTAGTTCACTTGTATTTAGGCAAGTATAGCGGATGCAATGTAGTGATATTTACCAGCTTATGTTTGTTACCTTATATTCTCAATTGTAAAATTAATTCTCATATAAAAAAGATTTCTAATAACTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073214 lncRNA upstream 9285 42605082 ~ 42605896 (+) True G1812247
TU2073220 lncRNA upstream 10255 42604539 ~ 42604926 (+) False G1812247
TU2073209 lncRNA upstream 11751 42602097 ~ 42603430 (+) True G1812242
TU2073210 lncRNA upstream 23071 42591839 ~ 42592110 (+) True G1812243
TU2073198 lncRNA upstream 34927 42579924 ~ 42580254 (+) True G1812233
TU2073421 lncRNA downstream 9070 42694178 ~ 42694638 (+) True G1812414
TU2073422 lncRNA downstream 11152 42696260 ~ 42696694 (+) True G1812415
TU2073429 lncRNA downstream 25774 42710882 ~ 42711142 (+) True G1812422
TU2073430 lncRNA downstream 29079 42714187 ~ 42714426 (+) True G1812423
TU2073431 lncRNA downstream 29978 42715086 ~ 42715311 (+) True G1812424
XM_021579751.2 mRNA upstream 64211 42511973 ~ 42550970 (+) False LOC110501894
XM_021579752.2 mRNA upstream 64211 42511974 ~ 42550970 (+) True LOC110501894
XM_021579744.2 mRNA upstream 225713 42256417 ~ 42389468 (+) False LOC110501889
XM_021579999.2 mRNA upstream 671956 41941197 ~ 41943225 (+) False LOC110502132
XM_036959348.1 mRNA downstream 3107 42688215 ~ 42734562 (+) False LOC110502157
XM_036959349.1 mRNA downstream 3107 42688215 ~ 42734562 (+) False LOC110502157
XM_036959354.1 mRNA downstream 199603 42884711 ~ 43036930 (+) False LOC110501901
XM_036959353.1 mRNA downstream 199603 42884711 ~ 43037994 (+) False LOC110501901
XM_021579762.2 mRNA downstream 528732 43213840 ~ 43226393 (+) False LOC110501905
TU2072843 other upstream 225894 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 274789 42329273 ~ 42340392 (+) False LOC110501889
TU2072842 other upstream 306965 42256555 ~ 42308216 (+) False LOC110501889
TU2071621 other upstream 1148832 41464478 ~ 41466349 (+) True G1810740
TU2071418 other upstream 1422689 41189689 ~ 41192492 (+) True G1810553
TU2073435 other downstream 38564 42723672 ~ 42724114 (+) True G1812428
TU2073416 other downstream 44493 42729601 ~ 42735867 (+) True LOC110502157
TU2074041 other downstream 464654 43149762 ~ 43150384 (+) True G1812953
TU2074610 other downstream 1423136 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 1424212 44109320 ~ 44110867 (+) False G1813442

Expression Profile