G1812247 (psd12)


Basic Information

Item Value
gene id G1812247
gene name psd12
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42604539 ~ 42605896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2073220
CCAGGAGGCCAGCCATCCTCTTCATTGTGATTCTTGTGTAATATTTGGCCATAATTCTTATATTGTGCTCCACCACTCTATTCTTGAGGTCCTTCCACCTCTTCTCGCCCTCCTCTGAGAAGTTGAATACGTCGGTGGCCGGGCTGCCCTCCCTCAGCTCCTCCCCATAATCCTCCACCAGGGAGGCCCAACGCATTAGCTCCATGGTGGTGAACTGCTTCAGGAGGTCCTTGTATTTGGGTATTTCTTCCAATTTATTGTCTTCGTTGATTCTGTGCACCAGGTCTAACTGCTCGTTGTCGTAGGGAGCCAGTATCACATACAGAACAACACTTTTCAGGGCCTGTTGCCATTTGGAGCTATCCTCCAGAATGCAGGGGGTATCATA
>TU2073214
AGTCCTTGACAGCGATGCACAGTCTCATTTGCTCCAAGATAAACTCcaccttctctttcttctccatgGAGCCGTATGTCTCCACCTGCAGCTCTTGGAGGATTGCTGCGGCCTCTTTGACCTCGCCATGCTGCTCCTTGATGTTTGCCACTGTTTTTGTCAGCCTGGCTCGCTCAATCTCCACATAGATCTTTCCAGCGGTCACTGTGCGTAGTGTGTCAATGAGTCTCAGTTTAACGGTCAGGTCGGTCACGGTATCTACATACTTGTAACATTATTGCACCATCTTAGCAACAGCCCCTTTGAGCTGACTCCTCCTTTTAGAGAGCAGCATGATGTTTTCATTCAGGGCATCCATGTCCTTCGCTTCATAGAACATCTGCACAACGGCCACCAGGATTCTGGAGGTTGACACCATGTCAGAAGCCGTTCTTGTTTGCATCTCCAGCGACAAGAGGCTTTCAACGGCCTCCTGCAACCTACCTTCTTTTGCCATTTTGGCACACTCCGGTAGACTTGTATCTACAGTTGAACTGTAGTCAATCTCCATCTTCACAAGCTTGCCATCTGATCTTTCTGATCGCTCTACCTCTGCTGACATGTTTTCCGACATCGTAAGTTGAATACTACGGCGAATTGACAAGTGAAATGTCTGCTAAGTGCTAAGAGCTTTTTTCTAACTTCAACTATGCACACACCAAGGTTATGCTGTTGGTCAGCGGTGGAAAAAGTAgccattgtcatacttgagtaaaagtaaagataccttattagaaaatggctcaagtaaaagtgaatgtcacccCATAcagtac

Function

NR:

description
26S proteasome non-ATPase regulatory subunit 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2073220 False 388 lncRNA 0.50 1 42604539 42604926
TU2073214 True 815 lncRNA 0.46 1 42605082 42605896

Neighbor

gene id symbol gene type direction distance location
LOC110501894 glpc coding upstream 53569 42511973 ~ 42550970 (+)
LOC110501889 LOC106582433 coding upstream 215071 42256417 ~ 42389468 (+)
LOC110502132 clm8 coding upstream 661314 41941197 ~ 41943225 (+)
LOC110502150 NA coding upstream 1076403 41526982 ~ 41528136 (+)
LOC110501885 LOC106582417 coding upstream 1241413 41286486 ~ 41363126 (+)
LOC110502156 ahr2a coding downstream 9282 42615178 ~ 42685108 (+)
LOC110502157 LOC106582435 coding downstream 82319 42688215 ~ 42735867 (+)
LOC110501901 LOC106582440 coding downstream 278815 42884711 ~ 43039681 (+)
LOC110501905 LOC106582444 coding downstream 607944 43213840 ~ 43226393 (+)
LOC110501904 LOC106582430 coding downstream 624528 43230424 ~ 43232133 (+)
G1812242 NA non-coding upstream 1109 42602097 ~ 42603430 (+)
G1812243 NA non-coding upstream 12429 42591839 ~ 42592110 (+)
G1812233 NA non-coding upstream 24285 42579924 ~ 42580254 (+)
G1812228 NA non-coding upstream 31504 42572828 ~ 42573035 (+)
G1812227 NA non-coding upstream 32236 42570009 ~ 42572303 (+)
G1812261 NA non-coding downstream 61713 42667609 ~ 42667876 (+)
G1812414 NA non-coding downstream 88282 42694178 ~ 42694638 (+)
G1812415 NA non-coding downstream 90364 42696260 ~ 42696694 (+)
G1812422 NA non-coding downstream 104986 42710882 ~ 42711142 (+)
G1810740 NA other upstream 1138190 41464478 ~ 41466349 (+)
G1810553 NA other upstream 1412047 41189689 ~ 41192492 (+)
G1809107 NA other upstream 2679144 39924414 ~ 39925395 (+)
G1808787 NA other upstream 2909671 39693913 ~ 39694868 (+)
G1812428 NA other downstream 117776 42723672 ~ 42724114 (+)
G1812953 NA other downstream 543866 43149762 ~ 43150384 (+)
G1813442 NA other downstream 1502348 44108244 ~ 44110867 (+)
LOC110502169 LOC106582455 other downstream 1712262 44148629 ~ 44324651 (+)

Expression


Co-expression Network