RNA id: TU2074482


Basic Information

Item Value
RNA id TU2074482
length 207
lncRNA type read_through
GC content 0.39
exon number 2
gene id G1813354
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43841540 ~ 43890311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctagaaaaccgttacacatttGCCACAGCAAACAGGAAAAAGGGGGGACCTCACTGTCTTGTGCCCCTTTCTAAACTAATTTCATCAGACACTGTTTTATTGGTGAATTTGTGTGCTGTAggacacttgtttttcaacaggacaatgtctCAACACACCACCAGgtgtggctactttgaagaatctaaaaatcaaaaatatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074454 lncRNA upstream 105807 43724577 ~ 43735733 (+) True G1813332
TU2074424 lncRNA upstream 177857 43663195 ~ 43663683 (+) True G1813302
TU2074377 lncRNA upstream 184405 43586693 ~ 43657135 (+) True G1813258
TU2074326 lncRNA upstream 268699 43550721 ~ 43572841 (+) True LOC110501909
TU2074325 lncRNA upstream 291639 43546579 ~ 43549901 (+) True LOC110501907
TU2074555 lncRNA downstream 77572 43967883 ~ 44005825 (+) True G1813419
TU2074576 lncRNA downstream 124944 44015255 ~ 44015582 (+) True G1813439
TU2074652 lncRNA downstream 188638 44078949 ~ 44087437 (+) True G1813475
TU2074658 lncRNA downstream 241383 44131694 ~ 44132872 (+) True G1813481
TU2074592 lncRNA downstream 249932 44140243 ~ 44145216 (+) False LOC110502168
XM_036959361.1 mRNA upstream 197624 43641312 ~ 43643916 (+) True LOC110502162
XM_036959593.1 mRNA upstream 213648 43626441 ~ 43627892 (+) True LOC118943639
XM_021579781.2 mRNA upstream 268593 43550472 ~ 43572947 (+) False LOC110501909
XM_036959359.1 mRNA upstream 291605 43501793 ~ 43549935 (+) False LOC110501907
XM_036959598.1 mRNA downstream 17348 43907659 ~ 43908820 (+) True LOC118943642
XM_036959082.1 mRNA downstream 80087 43970398 ~ 43971412 (+) True LOC110501910
XM_036959365.1 mRNA downstream 85704 43976015 ~ 43979227 (+) True LOC118943610
XM_036959366.1 mRNA downstream 101927 43992238 ~ 43995375 (+) True LOC110502167
XM_036959364.1 mRNA downstream 133964 44024275 ~ 44144044 (+) False LOC110502168
TU2074041 other upstream 691156 43149762 ~ 43150384 (+) True G1812953
TU2073416 other upstream 1105673 42729601 ~ 42735867 (+) True LOC110502157
TU2073435 other upstream 1117426 42723672 ~ 42724114 (+) True G1812428
TU2072843 other upstream 1452253 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 1501148 42329273 ~ 42340392 (+) False LOC110501889
TU2074610 other downstream 217933 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 219009 44109320 ~ 44110867 (+) False G1813442
TU2074607 other downstream 219009 44109320 ~ 44110867 (+) False G1813442
TU2074609 other downstream 219009 44109320 ~ 44110867 (+) True G1813442
TU2074675 other downstream 427847 44318158 ~ 44320111 (+) True LOC110502169

Expression Profile