RNA id: XM_036959366.1


Basic Information

Item Value
RNA id XM_036959366.1
length 3138
RNA type mRNA
GC content 0.35
exon number 1
gene id LOC110502167
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43992238 ~ 43995375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggccgaatactttcgcaaggcactgtagtttgtgAGGTTGACAACTTTGGCTAAATATTTGCAATACAACACTTCCTCACATCTTTGCAATAGTTCTTAAACAACAGTATTTGTGAAATGAATGTTAGATATATTTCCTTAAACATCCTTTGTTGTGTGCTTATTCTTTAACCATTGATATGCTCCTGGTCATTTTGAAACCTTCATCGTCGACCAACGGCATgtccaacttattgtgagaaatTACCCTGGTCACTCAAAACATTTATTAATCATTTCAAAAGTATAAATAGCTCTCATTTTAGATCAGGGACTGCAAAAATATTTTATTAGTACtaatgattagtaaatggtttaaATATACAAAATCCAATGACTCAttaatacataatttaaaagttATTTATAAATGTGAGAATACTTAGCTTACTAACATTTAACAAATATGGGTGTAATGATTCATAAATGGTCACAAAACTGTAAAGGCCTGTAAATGCTTTATTACTGAATGTTATTATAAAGTGTTTGTCTGAAGTCTGATTCACACAATCACACTGTTTACtgttacagtacagtatttaGACTTGTATTATAGGTGGTCCTTGTGCCCAGAGTCTGGGGGCTACCGCTGAAGCTGTTGAAGGCTATCTTCATTAAATGGCTAATTGTGAATTATTCCAAAAGATGTCATTTTTTTCTGAAATGTTCTTTAATAAGTGCTTTTGAGATGATTGATTCAACTAAATTAAATGGAAATTACATTTAGTCTTTTAAATCAGAGAAAACAACACACCAGAAAAGGAAAACAACATTACGGGGTGATTGGGTCAGAATACAGTGTTGTTCTGATGTCTGACAAATAGTATTTGTTACCATGATGTAACTGAGACAAAGTCTACCTCAACTTGAAGAAGTACTATTCATAATTCAGTTCATAATGGACATTTCTAAACGTCTGGAATGTTCATATGTAATGCCACTATTCATTTTGACTGCATGTGCTCTAGTGCATACCCCATAAGGCCCTACAAAGGCAAAAAACAGTTACTACGTAATTTATTTTACTGCTAAATCTGACTTCAAAGTCTTTTtctgtctagacagacaccaATTGCTAAAACTCTATGATATATTCTGATCAACTGGCTTGTTCCTGTGTCAGGAAACTAAATACCACATTAATCAGATAATATAACTGGCCAGTACAACAGATTCAATTTGTAGGGCTGCATACATTTATGCCATTTCATCAACTTCCCTACTGTCAACTTTCCTACACACTGGCCAGCTGACATGTGGTCATGTCTCCTGAGGTTGTAGATTATGGTCCAAACTAGCACTAATCACTCAAAACTGTTATTCTGCACAATTATCCTATTTcccatgtaaaatagcctttGAGTGACCAGAACATCTCCCATACTATATATATTCtcatttttttcccccatatATTTTCCCATTAAAATTCTCAGTTGAGAAAATGTACCTTTTGCTCTCATCTCTAACTACCAGTAAGACTGAAGGACAGGCTAGGTGGGCAGAGAAACCAATCCTGTTATACATTACATCATAAACAAATAATTTATCTAACCGTTCTAACCATTTGTGTGCTcaagtgtgtgtttgcatgcagaGAGACTCCGGGGAGGGGAGTTTCTGCCATTAACTCGGGGATAAATAGAGAGGCAGAGCTCAGAGTTTGTCAGAAGGCTGACCTGACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTCTACCCTTGATTACAGATGGAGAAACATGAAGATGTTCAATACTGTTTTCAGGACAGAAACTCTTCTTGTAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTACAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGACTGATTGTGATACCAGTAACGACTGTAGCATTAATGGAATCATGCTGGGGTTTTGGgaaatatttctgtgtgtttcagATCTACATTACTTTCTTATGTAGTTCTTTATCTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCACtctaaaataacaacaacaagaaTCATGTGTTGTATATCCATTACCTGGTGTTGTTGTATCATATACCGTGCTGCTATTGTAAAAAACTTTGTCAATGTACAGGTACCCAGTAGGTGTTTGAAAGAATGTTTTATTGTTGAAGGAATAACCTGGGGAAATATAATTGACCTTCTATTTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTCCCAGTGTGTCTGGTGTTAAAACTGTACAGGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTGTCTATTGTTGTTTTCAACTATTTCATTTGTTGGAttccatttttattttctttctttttgtattttttaattgACAGTTTGTTTTCAGTTATGATCATCGGCTTTCTACCACTTTTTAACTCTTTTATCAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACAGCTAAACGTATTTTAACTCTGAAGTTttaaattgtattatttatttattttattatttatttcactagtcggttaagaacaagttcttatttacaatgtcggccTAACTTAAGGCATAAATAGTTTGTATTCCTACGTTTGACAAACGTGTTTTGATATAGTTTTGTAATACAATTATTGTAATTGCTTCTTTCATGTAACAATACACTGACATTACTTATCTCAGTATTGTCATAAGGTAGATAGATGCGTGTGATACAGCATTATTTGTCTGGATTGGTTTGGAATGACTTGGAAAAAGTATAAGAAAGCATAAGCTTGTTTTATCAGATACATTGTAGTCATTTTGGGTTGTACATTCCAAATACCAAAGGCTGTGGTTGTTCCGTGTTATTTAATAATAAATAGTATGTAAGTATTCTAATAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074482 lncRNA upstream 101927 43841540 ~ 43890311 (+) True G1813354
TU2074454 lncRNA upstream 256505 43724577 ~ 43735733 (+) True G1813332
TU2074424 lncRNA upstream 328555 43663195 ~ 43663683 (+) True G1813302
TU2074377 lncRNA upstream 335103 43586693 ~ 43657135 (+) True G1813258
TU2074326 lncRNA upstream 419397 43550721 ~ 43572841 (+) True LOC110501909
TU2074576 lncRNA downstream 19880 44015255 ~ 44015582 (+) True G1813439
TU2074652 lncRNA downstream 83574 44078949 ~ 44087437 (+) True G1813475
TU2074658 lncRNA downstream 136319 44131694 ~ 44132872 (+) True G1813481
TU2074592 lncRNA downstream 144868 44140243 ~ 44145216 (+) False LOC110502168
TU2074593 lncRNA downstream 148685 44144060 ~ 44145216 (+) True LOC110502168
XM_036959365.1 mRNA upstream 13011 43976015 ~ 43979227 (+) True LOC118943610
XM_036959082.1 mRNA upstream 20826 43970398 ~ 43971412 (+) True LOC110501910
XM_036959598.1 mRNA upstream 83418 43907659 ~ 43908820 (+) True LOC118943642
XM_036959597.1 mRNA upstream 139212 43850609 ~ 43853026 (+) True LOC118943641
XM_036959361.1 mRNA upstream 348322 43641312 ~ 43643916 (+) True LOC110502162
XM_036959364.1 mRNA downstream 28900 44024275 ~ 44144044 (+) False LOC110502168
XM_036959362.1 mRNA downstream 28902 44024277 ~ 44144044 (+) False LOC110502168
XM_036959363.1 mRNA downstream 28902 44024277 ~ 44144044 (+) False LOC110502168
XR_005038840.1 mRNA downstream 28902 44024277 ~ 44145882 (+) False LOC110502168
XM_036959372.1 mRNA downstream 153254 44148629 ~ 44322071 (+) False LOC110502169
TU2074041 other upstream 841854 43149762 ~ 43150384 (+) True G1812953
TU2073416 other upstream 1256371 42729601 ~ 42735867 (+) True LOC110502157
TU2073435 other upstream 1268124 42723672 ~ 42724114 (+) True G1812428
TU2072843 other upstream 1602951 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 1651846 42329273 ~ 42340392 (+) False LOC110501889
TU2074610 other downstream 112869 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 113945 44109320 ~ 44110867 (+) False G1813442
TU2074607 other downstream 113945 44109320 ~ 44110867 (+) False G1813442
TU2074609 other downstream 113945 44109320 ~ 44110867 (+) True G1813442
TU2074675 other downstream 322783 44318158 ~ 44320111 (+) True LOC110502169

Expression Profile