RNA id: TU2074658


Basic Information

Item Value
RNA id TU2074658
length 551
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1813481
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44131694 ~ 44132872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgggatgttgtgtttgacttgggatgttgtgtttgactcgggatgttgtgattgacttgggatgttgtgattgacttgggatgttgtgattgacttgggatgttgtgattgacttgggatgttgtgattgacttgcGATGTTGTGATTGACTCGGGATGTTGGGATTGACTTGCGATGTTGggattgacttgggatgttggGATTGACTcgggatgttgtgattgacttgggatgttgtgattgacttgcGATGTTGGGATTGACTTGcgatgttgtgattgacttgcGATGTTGTGTTTGATttgggatgttgtgattgacttgggatgttgtgattgacttgggatgttgtgtttgactcgggatgttgtGATTGACTcgggatgttgtgattgacttgggatgttgtgattgacttgcGATGTTGGGATTGACTTGcgatgttgtgattgacttgcGATGTTGTGTTTGATttgggatgttgtgattgacttgcgatgttgtgattgactcaggatgttgtgattgacttgggatgttgtgtttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074652 lncRNA upstream 44257 44078949 ~ 44087437 (+) True G1813475
TU2074576 lncRNA upstream 116112 44015255 ~ 44015582 (+) True G1813439
TU2074555 lncRNA upstream 125869 43967883 ~ 44005825 (+) True G1813419
TU2074482 lncRNA upstream 241383 43841540 ~ 43890311 (+) True G1813354
TU2074454 lncRNA upstream 395961 43724577 ~ 43735733 (+) True G1813332
TU2074592 lncRNA downstream 7371 44140243 ~ 44145216 (+) False LOC110502168
TU2074593 lncRNA downstream 11188 44144060 ~ 44145216 (+) True LOC110502168
TU2074662 lncRNA downstream 13829 44146701 ~ 44146942 (+) True G1813485
TU2074678 lncRNA downstream 22391 44155263 ~ 44155647 (+) True G1813493
TU2074735 lncRNA downstream 90309 44223181 ~ 44224024 (+) True G1813544
XM_036959366.1 mRNA upstream 136319 43992238 ~ 43995375 (+) True LOC110502167
XM_036959365.1 mRNA upstream 152467 43976015 ~ 43979227 (+) True LOC118943610
XM_036959082.1 mRNA upstream 160282 43970398 ~ 43971412 (+) True LOC110501910
XM_036959598.1 mRNA upstream 222874 43907659 ~ 43908820 (+) True LOC118943642
XM_036959597.1 mRNA upstream 278668 43850609 ~ 43853026 (+) True LOC118943641
XM_036959372.1 mRNA downstream 15757 44148629 ~ 44322071 (+) False LOC110502169
XM_036959381.1 mRNA downstream 15757 44148629 ~ 44322071 (+) False LOC110502169
XM_036959382.1 mRNA downstream 15757 44148629 ~ 44322071 (+) False LOC110502169
XM_036959383.1 mRNA downstream 15757 44148629 ~ 44322071 (+) False LOC110502169
XM_036959380.1 mRNA downstream 62053 44194925 ~ 44298345 (+) False LOC110502169
TU2074610 other upstream 20827 44108244 ~ 44110867 (+) False G1813442
TU2074604 other upstream 20827 44109320 ~ 44110867 (+) False G1813442
TU2074607 other upstream 20827 44109320 ~ 44110867 (+) False G1813442
TU2074609 other upstream 20827 44109320 ~ 44110867 (+) True G1813442
TU2074041 other upstream 981310 43149762 ~ 43150384 (+) True G1812953
TU2074675 other downstream 185286 44318158 ~ 44320111 (+) True LOC110502169
TU2074792 other downstream 229789 44362661 ~ 44371923 (+) True G1813588
TU2074885 other downstream 365585 44498457 ~ 44508051 (+) True G1813665
TU2074893 other downstream 434016 44566888 ~ 44573921 (+) True LOC110501918
TU2076178 other downstream 977675 45110547 ~ 45111229 (+) True G1814811

Expression Profile