RNA id: TU2076157



Basic Information


Item Value
RNA id TU2076157
length 220
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1814790
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45076819 ~ 45077038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgcacttcacaaaatggatggcatcatgacaaaggaaaattatgtggatatattgaagcaatatctcaagacatcagtcaggaagttaaagcttggtcgtaaatgggtcttcccaatgaacaatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacatagtcaaggtattggagtggccatcacaaagccctgaccttaatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2076155 lncRNA upstream 1986 45074542 ~ 45074833 (+) True G1814788
TU2076144 lncRNA upstream 21407 45055199 ~ 45055412 (+) True G1814777
TU2076136 lncRNA upstream 33169 45043364 ~ 45043650 (+) True G1814769
TU2076066 lncRNA upstream 52235 45023458 ~ 45024584 (+) True G1814704
TU2076063 lncRNA upstream 54666 45009814 ~ 45022153 (+) True LOC110501931
TU2076172 lncRNA downstream 18344 45095382 ~ 45095736 (+) True G1814805
TU2076179 lncRNA downstream 35372 45112410 ~ 45112727 (+) True G1814812
TU2076183 lncRNA downstream 43758 45120796 ~ 45121074 (+) True G1814816
TU2076184 lncRNA downstream 44281 45121319 ~ 45121539 (+) True G1814817
TU2076187 lncRNA downstream 47002 45124040 ~ 45124258 (+) True G1814820
XM_036959408.1 mRNA upstream 54649 45009747 ~ 45022170 (+) False LOC110501931
XM_036959409.1 mRNA upstream 54649 45009747 ~ 45022170 (+) False LOC110501931
XM_021580002.2 mRNA upstream 88975 44983911 ~ 44987844 (+) True LOC110502137
XM_036959401.1 mRNA upstream 418250 44647146 ~ 44658569 (+) False LOC110501922
XM_021579820.2 mRNA downstream 95853 45172891 ~ 45175477 (+) False LOC110501942
XM_021579822.2 mRNA downstream 95955 45172993 ~ 45175477 (+) False LOC110501942
XM_036959411.1 mRNA downstream 98857 45175895 ~ 45251964 (+) False LOC110501941
XM_036959410.1 mRNA downstream 173744 45250782 ~ 45252926 (+) True LOC118943613
XM_036959413.1 mRNA downstream 185177 45262215 ~ 45267589 (+) True LOC110502139
TU2074893 other upstream 502898 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 568768 44498457 ~ 44508051 (+) True G1813665
TU2074792 other upstream 704896 44362661 ~ 44371923 (+) True G1813588
TU2074675 other upstream 756708 44318158 ~ 44320111 (+) True LOC110502169
TU2074609 other upstream 965952 44109320 ~ 44110867 (+) True G1813442
TU2076178 other downstream 33509 45110547 ~ 45111229 (+) True G1814811
TU2076159 other downstream 95937 45172975 ~ 45175472 (+) True LOC110501942
TU2076385 other downstream 444882 45521920 ~ 45527440 (+) True LOC110502177
TU2076542 other downstream 648109 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 704461 45781499 ~ 45782536 (+) True G1815137

Expression Profile