LOC110501934 (LOC106582485)


Basic Information

Item Value
gene id LOC110501934
gene name LOC106582485
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45669820 ~ 45682015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579811.2
ACTGATCatcctgacagacagactgtctAGTACCTGCATATCATATGATAAAGTGTCCTTCTCATCAACATTCTCCAAACCACTACCCTCTCCTCATCAAGCCAAATCCACTGaaggaaaaaaaactatttaaaaaaggagaaaaaaaacagctGTCAGGGCAGATGAATTCCTTCACTTTGTGCGTGGACTTGGAAACCGGAGGATTTTTTTTGCTGTCTCCTAGCAACACCAAACAAGAAAACAAAAGAGAgaagttgagagagagaaaacattagaGTTGAGTGGTCGTAAAGGacaccagtgtgtgtgggtgtggaacAGGTGTTGGATACCTGGGCACAGTGTGTTGAAGAGTCTGCCTGCGGTAGAGAGATCAGCATATGGCGCCTGTCACAATGAGTCTGTCAGCGATACAAGAACAGGATGCTGCAGggtAAAGGAGTGACTTCATTTCAAGGCCGAGATCTGGTTGCAGGAAGGCCTGCTCATACCGTGACTCTAACACCCTAGCCTCCACCTCTTGGTCTGCCGTTATGTTCCCCATCCATCCCCACAGCCCCAGTCCCTTGGGTCATTCCGACACAGAGACCCCAGAGCAAGACCACCtagcccccctctccccctccctcccgccctgCTGGGCCACCCAGGCCCTGTGTGACCTGGCCCGGGGGGAGACAGAGCTGCGACGGCTGCTGGAGCGCCAGGTGGCTGAGACAGAGGGAGTGAGCAGGGGGCTGGAGCGTGCCATACTAGGGGCGAGACGGGAGGAGCGGCGTCTGCTGGAGAGAGTGGAGCAGGACCACCGGGACACCCAGCGGAGGCTGGAGCAGCTGCAGAGGGAAAATGCTGCGGCCGCCCGAGTTAGTCAGGCCCTGCTGGACCAGAGGCTCCGTAAGGTCGCCCAGCTACGGGAGCTGATCCAGAGGAGTGGTCAGGGCCAGACAGGGCCCGATCAGAACCTCCTGATCAGAGGGGTCGCCGACCTCCTCCAGCCCTGGGAGATCTCCCTCTCCCTGAAGAAGGTGAGCTTCAGACCCAGCTCCCAGCCCAATGTCGTGACCTTCGGGGAGATCAGATTCCAGGAGCACAACCTCTGTCTTAATGTGGGGGGTTGTGGCCCAGAGGGACAGTTTTGTGCCCTCCACTCTGGGGAGCACTGTGGGAATGCCCAGCATGGGGGTGCAGGGGAAGTGAGAAGTACCCCCGATGGAGGGACTGGGCCGGGGCAGGATGTGACCTCACCGACAGGCAGTGGGAACCTGAGGGTTGTCAGGAAGATCCGCCTCTCTGCCAGGAGTGACGAGGAGTCGGGAGAAGAGAAGAAGTCATCCCCAAAAAGGAGACGCTGGCCTCCTAAGAGGGAGCCCTCTGACAGGGAGTCATCCCAGGATGAGGAGACAGAATCCCCTATATCTCAACCACGAGAAGAGGACCTCTTCCTGGCCACCTCCGCGTCGCTTAGCAACGGAGACTCTGAAGAGGACTTGAGGCACAGGACGAACAATTTCGGCGGCCGGCTGGGTTACGGGGTCATGAGCAAGAGGAAGCAACGCACCCTGGTCATGGTCTCTGGCCGTGAGCCCTGCTCCCCACCAGAGGGGGGCAGACTGAAGCACAGCAGCCTCAGTCCCTGCTGGAGCCTGGACAGTCAGGATGGAGGAGACAGCAGAGGCAGAGTGAGACAGTGTGAGTTCCCCAGGGAACTGCCATCTCCTAGCTACAGAACAATGGGCTCTCCCTCTCCTAAGGTCAGTCCTAGGGagccactgaccagctatagctGCATGGACCTCACCTCCAGAGAGTGCCCTCACTTGTGCCTCAGCGTGTCCTCTGATGACCACCAAATGGGCCCCACAGGGGACTCTGGCCATCCTCTTTCCCCAGCCGACAGCCTTGATTCCTGCTACACCTTCATCGTCAGCTCCCCCCGGGATCACAGCCTTAGAGGCTCCCTGAACCATGACCCCCGCCTGTCCAAGTCAGCGGCAGACTTGTCACGCAAGACCCGCCCACTGATCAACTGTAGGAGGGGGGAGCATGTGGGGGCCTGGAGGGTGAACAGGAGCAGCCtgacctccaccaccacctccatcccCCCGACACTAAGCCGAGGACACACCGTCTCTGAGGGTCTACAGAGCCCCACCGGGCGCAGAGACTCTGGGGTGTGGGGCCCAGTAGTCAAGAGGCAGAGTGGGATTATAGGGAGTACCAGCCGGGTGAGCAGGTGTCTCTCCATGTCGGTCATAGACTCTGCCTCTCAGGAGCAGCAGGGGAGAGGCTggggggacagaggggagaaaggagagccTGCTCTgacagagatggaagaggaaggagGCCACCTCCAGCCCCAGCTTGGGTGTCTGATCCGTCAGTTTGGTAAACAAGGCTCCGGCCGTGCAGACCTCACCCTGCCCAGCGGGGTCCACGCCACGCCCCAGGGGCAGCTTTTCGTGGTGGACTGTGGGAACGCCCGCGTCCAGGTGACCGACCCGCGAGGGAACGTCCTCCAGCAGGTGACCTCCACGACCTCCGAGGGCTCCGTTCGACGCTGCCGGAACTACTTCGACATCGCCGTCAACGCCAAGGGCCTGATCGCTCTGAGCTGTGCAGCGGAGCGCGCCCTCCTGGTGTTCAACCGCCACGGCCGTCTGCTCCAGACCTTCGGCGGGTTGGGGATGGGCGCCGCCAAGGACGAGCTGGAGGCCCCCCGGGGCGTGACGGTGACCCGGCTGGATGAGTTCCTCGTGGCGGACATCCGGAAAGGCACCCTGACCACCCTCAAGCTGGACCCCAAGACGGGCTCTCGGCTGGAGCGCACAGTGGTGACTGGTTTCCACAGGCCCTACCTGGTGGCTGCCTGCCTGAGCTCTGGCCTGGTGGCCGTGTCAGAGAGGGGTAGCGAGACGGGCCGGGAGCCCTGCGTCAAGGTGCTGGAGCCGGGCTGGAACACGGTGAGGGTCCTGGGGGTGTGTGCCGGCATGGGGCCCGTCCTGACCAGCCCCTGGGGGATCTGCATAGACAGGGATGGAGacgtggtggtggtggactggggCAGGCAACACAGGGTGGTGATGTACCCAGCCCAGGGGGTAGGCAGGCCTATAATCACCCAGGGGCTGAGCAGCCCACGAGGTCTGGCCCTGCTTCCTGAGGGGCATCTAGTGGTGTCAGACAGCATGCACCACTGTATCAAGATCTACCAGTACAAGTGATGTCACCAGAACACTGTGCAGCAATAACACTCCCACAGAATTATGAGAAGGGGACTTCCTGTTTCTTTGTTATATGCTGAGACTTTTCACCTAACCAAATGTGAACTGTTTTTTAACTGTAATTTCAGCTAGCCTGTTTGTTCTCCGTCTACAAAGTTCTCCGTCTGTAGCCCTTAGGGGTAACCTACATGATTTAACCTACATGACCTGTAGATGTCAGCATTGAGACATCAAAATCCAATTTATAAAGTCCCTTTCCCTAGAATCAAACAGTTTTTGGAACATCAAAAGTTTACAGTAGTTCCCAAGGGCGCTGTAATCAGAGTAAACACAAACATTCTGTACACTGATGTCATCAGCGTCACTGTCATGTGATTACTCATAAATCCTTACCATTCGTTACATTCACATGTTGTAAAGTTTGGACGTCTCTTATACTATTTCCCTGTTCAATGTGATTTTgctgtgtaaaaaaaatatatatatatctataaatGTTCCACACTGTCGTGTCATTATTTTCTGACGGCGTGACAATCCTGTAGGCTGGAGACTGTATACCTCCCTTCCCACTCAGCTTCAATCACAGCTCGTCTTTCTCTCACAGCAAAACAAAACCAAACAGCACATGCATATTCTCCATTCTAGGATGGAtttactgtgataaataactCTAGTAACTTCCAACAATGACTGTGCTGTGCagtccaactcctctcctcactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgaatgTCTACGATATGAAGGATGTCTCACAGAGGAAGCCGCTGCATCGTGTTACTAA
>XM_021579812.2
ACTGATCatcctgacagacagactgtctAGTACCTGCATATCATATGATAAAGTGTCCTTCTCATCAACATTCTCCAAACCACTACCCTCTCCTCATCAAGCCAAATCCACTGaaggaaaaaaaactatttaaaaaaggagaaaaaaaacagctGTCAGGGCAGATGAATTCCTTCACTTTGTGCGTGGACTTGGAAACCGGAGGATTTTTTTTGCTGTCTCCTAGCAACACCAAACAAGAAAACAAAAGAGAgaagttgagagagagaaaacattagaGTTGAGTGGTCGTAAAGGacaccagtgtgtgtgggtgtggaacAGGTGTTGGATACCTGGGCACAGggtAAAGGAGTGACTTCATTTCAAGGCCGAGATCTGGTTGCAGGAAGGCCTGCTCATACCGTGACTCTAACACCCTAGCCTCCACCTCTTGGTCTGCCGTTATGTTCCCCATCCATCCCCACAGCCCCAGTCCCTTGGGTCATTCCGACACAGAGACCCCAGAGCAAGACCACCtagcccccctctccccctccctcccgccctgCTGGGCCACCCAGGCCCTGTGTGACCTGGCCCGGGGGGAGACAGAGCTGCGACGGCTGCTGGAGCGCCAGGTGGCTGAGACAGAGGGAGTGAGCAGGGGGCTGGAGCGTGCCATACTAGGGGCGAGACGGGAGGAGCGGCGTCTGCTGGAGAGAGTGGAGCAGGACCACCGGGACACCCAGCGGAGGCTGGAGCAGCTGCAGAGGGAAAATGCTGCGGCCGCCCGAGTTAGTCAGGCCCTGCTGGACCAGAGGCTCCGTAAGGTCGCCCAGCTACGGGAGCTGATCCAGAGGAGTGGTCAGGGCCAGACAGGGCCCGATCAGAACCTCCTGATCAGAGGGGTCGCCGACCTCCTCCAGCCCTGGGAGATCTCCCTCTCCCTGAAGAAGGTGAGCTTCAGACCCAGCTCCCAGCCCAATGTCGTGACCTTCGGGGAGATCAGATTCCAGGAGCACAACCTCTGTCTTAATGTGGGGGGTTGTGGCCCAGAGGGACAGTTTTGTGCCCTCCACTCTGGGGAGCACTGTGGGAATGCCCAGCATGGGGGTGCAGGGGAAGTGAGAAGTACCCCCGATGGAGGGACTGGGCCGGGGCAGGATGTGACCTCACCGACAGGCAGTGGGAACCTGAGGGTTGTCAGGAAGATCCGCCTCTCTGCCAGGAGTGACGAGGAGTCGGGAGAAGAGAAGAAGTCATCCCCAAAAAGGAGACGCTGGCCTCCTAAGAGGGAGCCCTCTGACAGGGAGTCATCCCAGGATGAGGAGACAGAATCCCCTATATCTCAACCACGAGAAGAGGACCTCTTCCTGGCCACCTCCGCGTCGCTTAGCAACGGAGACTCTGAAGAGGACTTGAGGCACAGGACGAACAATTTCGGCGGCCGGCTGGGTTACGGGGTCATGAGCAAGAGGAAGCAACGCACCCTGGTCATGGTCTCTGGCCGTGAGCCCTGCTCCCCACCAGAGGGGGGCAGACTGAAGCACAGCAGCCTCAGTCCCTGCTGGAGCCTGGACAGTCAGGATGGAGGAGACAGCAGAGGCAGAGTGAGACAGTGTGAGTTCCCCAGGGAACTGCCATCTCCTAGCTACAGAACAATGGGCTCTCCCTCTCCTAAGGTCAGTCCTAGGGagccactgaccagctatagctGCATGGACCTCACCTCCAGAGAGTGCCCTCACTTGTGCCTCAGCGTGTCCTCTGATGACCACCAAATGGGCCCCACAGGGGACTCTGGCCATCCTCTTTCCCCAGCCGACAGCCTTGATTCCTGCTACACCTTCATCGTCAGCTCCCCCCGGGATCACAGCCTTAGAGGCTCCCTGAACCATGACCCCCGCCTGTCCAAGTCAGCGGCAGACTTGTCACGCAAGACCCGCCCACTGATCAACTGTAGGAGGGGGGAGCATGTGGGGGCCTGGAGGGTGAACAGGAGCAGCCtgacctccaccaccacctccatcccCCCGACACTAAGCCGAGGACACACCGTCTCTGAGGGTCTACAGAGCCCCACCGGGCGCAGAGACTCTGGGGTGTGGGGCCCAGTAGTCAAGAGGCAGAGTGGGATTATAGGGAGTACCAGCCGGGTGAGCAGGTGTCTCTCCATGTCGGTCATAGACTCTGCCTCTCAGGAGCAGCAGGGGAGAGGCTggggggacagaggggagaaaggagagccTGCTCTgacagagatggaagaggaaggagGCCACCTCCAGCCCCAGCTTGGGTGTCTGATCCGTCAGTTTGGTAAACAAGGCTCCGGCCGTGCAGACCTCACCCTGCCCAGCGGGGTCCACGCCACGCCCCAGGGGCAGCTTTTCGTGGTGGACTGTGGGAACGCCCGCGTCCAGGTGACCGACCCGCGAGGGAACGTCCTCCAGCAGGTGACCTCCACGACCTCCGAGGGCTCCGTTCGACGCTGCCGGAACTACTTCGACATCGCCGTCAACGCCAAGGGCCTGATCGCTCTGAGCTGTGCAGCGGAGCGCGCCCTCCTGGTGTTCAACCGCCACGGCCGTCTGCTCCAGACCTTCGGCGGGTTGGGGATGGGCGCCGCCAAGGACGAGCTGGAGGCCCCCCGGGGCGTGACGGTGACCCGGCTGGATGAGTTCCTCGTGGCGGACATCCGGAAAGGCACCCTGACCACCCTCAAGCTGGACCCCAAGACGGGCTCTCGGCTGGAGCGCACAGTGGTGACTGGTTTCCACAGGCCCTACCTGGTGGCTGCCTGCCTGAGCTCTGGCCTGGTGGCCGTGTCAGAGAGGGGTAGCGAGACGGGCCGGGAGCCCTGCGTCAAGGTGCTGGAGCCGGGCTGGAACACGGTGAGGGTCCTGGGGGTGTGTGCCGGCATGGGGCCCGTCCTGACCAGCCCCTGGGGGATCTGCATAGACAGGGATGGAGacgtggtggtggtggactggggCAGGCAACACAGGGTGGTGATGTACCCAGCCCAGGGGGTAGGCAGGCCTATAATCACCCAGGGGCTGAGCAGCCCACGAGGTCTGGCCCTGCTTCCTGAGGGGCATCTAGTGGTGTCAGACAGCATGCACCACTGTATCAAGATCTACCAGTACAAGTGATGTCACCAGAACACTGTGCAGCAATAACACTCCCACAGAATTATGAGAAGGGGACTTCCTGTTTCTTTGTTATATGCTGAGACTTTTCACCTAACCAAATGTGAACTGTTTTTTAACTGTAATTTCAGCTAGCCTGTTTGTTCTCCGTCTACAAAGTTCTCCGTCTGTAGCCCTTAGGGGTAACCTACATGATTTAACCTACATGACCTGTAGATGTCAGCATTGAGACATCAAAATCCAATTTATAAAGTCCCTTTCCCTAGAATCAAACAGTTTTTGGAACATCAAAAGTTTACAGTAGTTCCCAAGGGCGCTGTAATCAGAGTAAACACAAACATTCTGTACACTGATGTCATCAGCGTCACTGTCATGTGATTACTCATAAATCCTTACCATTCGTTACATTCACATGTTGTAAAGTTTGGACGTCTCTTATACTATTTCCCTGTTCAATGTGATTTTgctgtgtaaaaaaaatatatatatatctataaatGTTCCACACTGTCGTGTCATTATTTTCTGACGGCGTGACAATCCTGTAGGCTGGAGACTGTATACCTCCCTTCCCACTCAGCTTCAATCACAGCTCGTCTTTCTCTCACAGCAAAACAAAACCAAACAGCACATGCATATTCTCCATTCTAGGATGGAtttactgtgataaataactCTAGTAACTTCCAACAATGACTGTGCTGTGCagtccaactcctctcctcactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgaatgTCTACGATATGAAGGATGTCTCACAGAGGAAGCCGCTGCATCGTGTTACTAA

Function

NR:

description
uncharacterized protein LOC110501934

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579811.2 False 4044 mRNA 0.56 3 45669820 45682015
XM_021579812.2 True 3954 mRNA 0.57 2 45669820 45682015

Neighbor

gene id symbol gene type direction distance location
LOC110502172 fam160a2 coding upstream 13727 45606721 ~ 45656093 (+)
LOC110501945 NA coding upstream 63319 45587722 ~ 45606501 (+)
LOC110502177 LOC106582482 coding upstream 141927 45521920 ~ 45527893 (+)
LOC118943643 LOC106582482 coding upstream 156057 45511851 ~ 45513763 (+)
LOC110502173 LOC106582449 coding upstream 340779 45327109 ~ 45329041 (+)
gatd3a LOC106582488 coding downstream 60838 45627869 ~ 45753090 (+)
LOC110501937 LOC106582489 coding downstream 156720 45838735 ~ 45841019 (+)
LOC110501938 LOC106582481 coding downstream 187293 45869308 ~ 45871541 (+)
ercc1 ercc1 coding downstream 250790 45932805 ~ 45940900 (+)
LOC110501949 LOC106582502 coding downstream 272348 45954363 ~ 45971125 (+)
G1815066 NA non-coding upstream 48741 45620627 ~ 45621079 (+)
G1815063 NA non-coding upstream 53125 45613945 ~ 45616695 (+)
G1815022 NA non-coding upstream 111971 45556541 ~ 45557849 (+)
G1815017 NA non-coding upstream 120784 45548818 ~ 45549036 (+)
G1815055 NA non-coding downstream 20180 45702195 ~ 45702733 (+)
G1815113 LOC106582487 non-coding downstream 43024 45725039 ~ 45726328 (+)
G1815114 NA non-coding downstream 98063 45780078 ~ 45780517 (+)
G1815586 NA non-coding downstream 111149 45793164 ~ 45793435 (+)
G1815588 NA non-coding downstream 114249 45796264 ~ 45796484 (+)
LOC110501942 atp5g2 other upstream 494348 45172891 ~ 45175477 (+)
G1814811 NA other upstream 558591 45110547 ~ 45111229 (+)
LOC110501918 LOC106582467 other upstream 1095899 44566863 ~ 44573921 (+)
G1813665 LOC106582464 other upstream 1161769 44498457 ~ 44508051 (+)
G1815137 NA other downstream 99484 45781499 ~ 45782536 (+)
LOC110501947 LOC106582498 other downstream 476644 46157212 ~ 46170323 (+)
G1815855 NA other downstream 494592 46176607 ~ 46177757 (+)
G1816074 NA other downstream 652825 46334840 ~ 46335370 (+)

Expression


Co-expression Network