ercc1 (ercc1)


Basic Information

Item Value
gene id ercc1
gene name ercc1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45932805 ~ 45940900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959425.1
GGTTGACATTTTCGACGCTCCGCAGTGGACGTCAGAACCAGAGCGACAGTTAGCTGAATGGATAGTTAAGAGGCATGTATTTGATTCAAATATGGAAAAAAAGAGGTTTAATATCAACCTAGACGACTCTGCCTTCACAAAAGAAAGAGCCCCGGTGAAACCCCTGTTCCAGCCCTCTAAGGCAGGCCAGagtgcatcatcatcatcatcatcaaccacCTCTGAGACCAAAGCTCAGCCTGCACCCCCGTCGTCTGCTGGCCAACCACTATCCTACGCAGAGTTCATTGTCCAGAGCAAAAGCCATGCACCTCAGCAAGTCCCCTCAGCTCCGTCCAGGGTGGCTGCAGGAACGGGGACAGGGATAGATACAGAGACTGGTAGTTTGAAGCAGGGTCCCAGTCAAGGAGCACAAGGTGGGCCTGATGTGACGTCGTCATCCTCTGTGGGGTGTGAGAGGCCTCGGGCCCAGGGGACAAAGGATCCGGGGTCTGGTGGACCACCAGGGGTtacacagggagaggaggggcagagggCTGGGACTGAGCAGAAGCAGGGGGAGGGTCAAGGGTCAGAGGGCAGCAACATCCTAGGTCATCCTAAACCAGTGGGGTCTGGTAATAGTATCATAGTCAGCCCCAGACAGAGAGGAAACCCCATTCTGAAATTTGTGAGGAGTGTGCCTTGGGAGTTTGGAGACGTGGTCCCCGACTATGTCCTGGGACAGACGACCTGCGCTCTCTTCCtcagTCTGAGGTACCACAACCTCAACCCCAACTACATCCACGACCGTCTCAAACTGTTGGGCCAGACCTTCACCCTCAGGGTTCTACTGGTGTTAGTTGATGTGAAAGACCCTCACCATTCTCTGAAAGAGCTGGCTCGTATCTGCATCTTGGCTGACTGCACTCTCATCCTGGCCTGGAGTCCAGAGGAGGCGGGGCGTTACCTGGAGACGTACAAGTCCTATGAGAAGAAACCAGCTGATCTGCTGAAGGAACATGTGGAGAAAGACTACCTGTCGAAGGTGACGGACTGTCTGACCACTGTGAAGTCTGTCAACAAGACTGACTCGATCACTCTGCTGTCAACCTTCTCTTCCTTAGAGGGGATCATCACTGCAACTAAAGAGGACCTGGTTCTCTGTCCTGGACTGGGACCCCAGAAGGCCAGACGTCTCTATGATGTGCTACACCAGCCCTTCCTCAAGGCCAAGAAGAAAGACAGCTGACCCACAGACAGTCCTTACTACTCTACTGTGGACCTTTCTCCTCAGCAGGGAACTGGTTTCCATAAAGGCCCACTATCCTAAGGACTGTTTcaactgtaatgtaatgttgttgtttttgcatttgtataaaaaataaatcactagAAAATA
>TU2077187
GCAGCAACATCCTAGGTCATCCTAAACCAGTGGGGTCTGGTAATAGTATCATAGTCAGCCCCAGACAGAGAGGAAACCCCATTCTGAAATTTGTGAGGAGTGTGCCTTGGGAGTTTGGAGACGTGGTCCCCGACTATGTCCTGGGACAGACGACCTGCGCTCTCTTCCtcagTCTGAGGTACCACAACCTCAACCCCAACTACATCCACGACCGTCTCAAACTGTTGGGCCAGACCTTCACCCTCAGGGTTCTACTGGTGTTAGTTGATGTGAAAGACCCTCACCATTCTCTGAAAGAGCTGGCTCGTATCTGCATCTTGGCTGACTGCACTCTCATCCTGGCCTGGAGTCCAGAGGAGGCGGGGCGTTACCTGGAGACGTACAAGTCCTATGAGAAGAAACCAGCTGATCTGCTGAAGGAACATGTGGAGAAAGACTACCTGTCGAAGGTGACGGACTGTCTGACCACTGTGAAGTCTGTCAACAAGACTGACTCGATCACTCTGCTGTCAACCTTCTCTTCCTTAGAGGGGATCATCACTGCAACTAAAGAGGACCTGGTTCTCTGTCCTGGACTGGGACCCCAGAAGGCCAGACGTCTCTATGATGTGCTACACCAGCCCTTCCTCAAGGCCAAGAAGAAAGACAGCTGACCCACAGACAGTCCTTACTACTCTACTGTGGACCTTTCTCCTCAGCAGGGAACTGGTTTCCATAAAGGCCCACTATCCTAAGGACTGTTTcaactgtaatgtaatgttgttgtttttgcatttgtataaaaaataaatcac

Function

symbol description
ercc1 Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be part of ERCC4-ERCC1 complex and nucleotide-excision repair factor 1 complex. Human ortholog(s) of this gene implicated in several diseases, including bone cancer (multiple); carcinoma (multiple); cerebrooculofacioskeletal syndrome 4; hematologic cancer (multiple); and transient cerebral ischemia. Orthologous to human ERCC1 (ERCC excision repair 1, endonuclease non-catalytic subunit).

NR:

description
DNA excision repair protein ERCC-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959425.1 False 1381 mRNA 0.52 9 45932805 45940900
TU2077187 True 794 lncRNA 0.50 8 45934077 45940891

Neighbor

gene id symbol gene type direction distance location
LOC110501938 LOC106582481 coding upstream 61264 45869308 ~ 45871541 (+)
LOC110501937 LOC106582489 coding upstream 91786 45838735 ~ 45841019 (+)
gatd3a LOC106582488 coding upstream 179715 45627869 ~ 45753090 (+)
LOC110501934 LOC106582485 coding upstream 250790 45669820 ~ 45682015 (+)
LOC110502172 fam160a2 coding upstream 276712 45606721 ~ 45656093 (+)
LOC110501949 LOC106582502 coding downstream 13463 45954363 ~ 45971125 (+)
LOC100136162 gbp coding downstream 40704 45981604 ~ 46008178 (+)
LOC110501948 LOC106582500 coding downstream 87649 46028549 ~ 46088009 (+)
serpine3 LOC106582496 coding downstream 166394 46107294 ~ 46115457 (+)
LOC110501947 LOC106582498 coding downstream 216312 46157212 ~ 46170323 (+)
G1815667 NA non-coding upstream 4520 45927808 ~ 45928285 (+)
G1815653 NA non-coding upstream 6326 45902806 ~ 45926479 (+)
G1815638 NA non-coding upstream 64099 45868451 ~ 45868706 (+)
G1815637 NA non-coding upstream 67596 45864983 ~ 45865209 (+)
G1815628 NA non-coding upstream 85007 45847524 ~ 45847798 (+)
G1815657 NA non-coding downstream 1015 45941915 ~ 45943882 (+)
G1815643 NA non-coding downstream 5322 45946222 ~ 45948045 (+)
G1815695 NA non-coding downstream 45729 45986629 ~ 45987016 (+)
G1815783 NA non-coding downstream 74120 46015020 ~ 46015271 (+)
G1815137 NA other upstream 150269 45781499 ~ 45782536 (+)
G1815113 LOC106582487 other upstream 206477 45725039 ~ 45726328 (+)
LOC110502177 LOC106582482 other upstream 405365 45521920 ~ 45527893 (+)
LOC110501942 atp5g2 other upstream 757333 45172891 ~ 45175477 (+)
G1814811 NA other upstream 821576 45110547 ~ 45111229 (+)
G1815855 NA other downstream 235707 46176607 ~ 46177757 (+)
G1816074 NA other downstream 393940 46334840 ~ 46335370 (+)
G1816206 LOC106581610 other downstream 811991 46752891 ~ 46770563 (+)
G1816706 NA other downstream 1143360 47084260 ~ 47085389 (+)

Expression


Co-expression Network