G1815657


Basic Information

Item Value
gene id G1815657
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45941915 ~ 45943882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2077188
tttctgggtaagtctctaagagtgattacagctgtgagtctgtcTGGGTAGCTGGTACTACCAGTACcagctagccagagaaatgttgagcaacattagccaacttAACTGATCAAATAGAATTTATGGTCTGAAAATTAGCTGCCTAATAAAGTCAGACAGCTACTGATTGTAACCTAACcttagccagcagcataccactggtagcttgcttctgaagctgagCAGGGTTGGTCTTGGTGAGTCCCTGGataggagaccagatgctgctggaaatggtgttggagggccagtaggaggcactctctCCTCTGGTCTAAAACATATCCtaataccccagggcagtgattggggacactgccctgtgtagggtgctgtctttcagatgggatgttaaacaggtgtcctgactctgatgtcattaaagatcccatagcacttatcataagagtaggggttgttaaccctggtgtcctggctaaattcccaatcgggccctcaaaccatcatggtcacctaatcatccctgGTTTACAGTTGTTTtattcatcctcctctcccctctaactattccccaggttgttgaggtaaatgagaatgtgttctcagtcaacttacctggtgaaataacggataaataaaataaccAATTCGCTATAGTGTTAACTGGTAATGTTatatgactccttgctgttcctCAAGTTATAACGCGTTAGTTGCTGACTGGACCCTGGCCATCTGTGTGACACGTTAACTAGCTAATGAACTAATGTTTTCCCAAAGGGTATCATTGCTCCGCTGGTACATTttagaacagatgtccacaggcagaaagtgtaccATTTGAATAACCTGCAGTGTTGCCAAAAGGTATAGCTTTTGTTGTGTTGTACTTGACAGTAACGTGTGAGTGAGGGGGGTTATTACGTGTTTTACTCAGTGAATGTTATTTTTTCAACACATGTATGCCTTCTGCATTTGATCGATGAACTTAAgatattttttttccccccccgagtgcaatatttagatgtgtgtgtgtggtcacaagcgttctattacaaaggctgtcatggctaactgcaatagcggttagagcgttgggccagtaaccaaaaagttgctgggtcgaatccctgagttgacaaggtaaaaattgagtgtattgtttttttttctctcaagacttgagtgtcatttgcagtTTTTTAGGTTCATATTtgacacacagagactgatcatgtgatttgttgtttaattagttaaaacctgcatttctccctagcagggattttttttgtgcctcatcacagccattaaactcaaactcttttaaagtcaccattggccttttatgaacagtttccttcctctccggcaactgagttaggaaggacgcctgtatctttgtaatgaataggtctattgatacaccatccaaagtgtaataacttcaccatgctccaagggatattcaatgtattttatttaaaaaatgtatccaccaatagttgcccttctttgtgaggcattggaaaacctccctggtctttgtgggaCAATCTGTGTTTTAAATGCACTGTTTGACTGAGGGACCCTACGgagaattgtatgtgtggggtgttTACCaagattatttttttattactattattgcacacagtgagtccatgcaatttattatgtgacctTGTTAAggaaatgtttactcctgaatttatttaggcttgctgtaacaaaggggttgaatacttattaacttaagacatttcagcatttaattttaacatttaaaaaaaaaaaaaaacataattccactttgacattattggggtattgtgatgtcattatggggtattgtgatgtcattatggggtattgtgtgtaagtcAGTGAAAATTGAATCCATTgtttattcaggctgtaacacaacaacatgtggaacaaGTAAAGGACtttgaattcttt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2077188 True 1968 lncRNA 0.40 1 45941915 45943882

Neighbor

gene id symbol gene type direction distance location
ercc1 ercc1 coding upstream 1015 45932805 ~ 45940900 (+)
LOC110501938 LOC106582481 coding upstream 70374 45869308 ~ 45871541 (+)
LOC110501937 LOC106582489 coding upstream 100896 45838735 ~ 45841019 (+)
gatd3a LOC106582488 coding upstream 188825 45627869 ~ 45753090 (+)
LOC110501934 LOC106582485 coding upstream 259900 45669820 ~ 45682015 (+)
LOC110501949 LOC106582502 coding downstream 10481 45954363 ~ 45971125 (+)
LOC100136162 gbp coding downstream 37722 45981604 ~ 46008178 (+)
LOC110501948 LOC106582500 coding downstream 84667 46028549 ~ 46088009 (+)
serpine3 LOC106582496 coding downstream 163412 46107294 ~ 46115457 (+)
LOC110501947 LOC106582498 coding downstream 213330 46157212 ~ 46170323 (+)
G1815667 NA non-coding upstream 13630 45927808 ~ 45928285 (+)
G1815653 NA non-coding upstream 15436 45902806 ~ 45926479 (+)
G1815638 NA non-coding upstream 73209 45868451 ~ 45868706 (+)
G1815637 NA non-coding upstream 76706 45864983 ~ 45865209 (+)
G1815643 NA non-coding downstream 2340 45946222 ~ 45948045 (+)
G1815695 NA non-coding downstream 42747 45986629 ~ 45987016 (+)
G1815783 NA non-coding downstream 71138 46015020 ~ 46015271 (+)
G1815798 NA non-coding downstream 127559 46071441 ~ 46072337 (+)
G1815137 NA other upstream 159379 45781499 ~ 45782536 (+)
G1815113 LOC106582487 other upstream 215587 45725039 ~ 45726328 (+)
LOC110502177 LOC106582482 other upstream 414475 45521920 ~ 45527893 (+)
LOC110501942 atp5g2 other upstream 766443 45172891 ~ 45175477 (+)
G1814811 NA other upstream 830686 45110547 ~ 45111229 (+)
G1815855 NA other downstream 232725 46176607 ~ 46177757 (+)
G1816074 NA other downstream 390958 46334840 ~ 46335370 (+)
G1816206 LOC106581610 other downstream 809009 46752891 ~ 46770563 (+)
G1816706 NA other downstream 1140378 47084260 ~ 47085389 (+)

Expression


Co-expression Network