RNA id: XM_021579812.2


Basic Information

Item Value
RNA id XM_021579812.2
length 3954
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC110501934
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45669820 ~ 45682015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGATCatcctgacagacagactgtctAGTACCTGCATATCATATGATAAAGTGTCCTTCTCATCAACATTCTCCAAACCACTACCCTCTCCTCATCAAGCCAAATCCACTGaaggaaaaaaaactatttaaaaaaggagaaaaaaaacagctGTCAGGGCAGATGAATTCCTTCACTTTGTGCGTGGACTTGGAAACCGGAGGATTTTTTTTGCTGTCTCCTAGCAACACCAAACAAGAAAACAAAAGAGAgaagttgagagagagaaaacattagaGTTGAGTGGTCGTAAAGGacaccagtgtgtgtgggtgtggaacAGGTGTTGGATACCTGGGCACAGggtAAAGGAGTGACTTCATTTCAAGGCCGAGATCTGGTTGCAGGAAGGCCTGCTCATACCGTGACTCTAACACCCTAGCCTCCACCTCTTGGTCTGCCGTTATGTTCCCCATCCATCCCCACAGCCCCAGTCCCTTGGGTCATTCCGACACAGAGACCCCAGAGCAAGACCACCtagcccccctctccccctccctcccgccctgCTGGGCCACCCAGGCCCTGTGTGACCTGGCCCGGGGGGAGACAGAGCTGCGACGGCTGCTGGAGCGCCAGGTGGCTGAGACAGAGGGAGTGAGCAGGGGGCTGGAGCGTGCCATACTAGGGGCGAGACGGGAGGAGCGGCGTCTGCTGGAGAGAGTGGAGCAGGACCACCGGGACACCCAGCGGAGGCTGGAGCAGCTGCAGAGGGAAAATGCTGCGGCCGCCCGAGTTAGTCAGGCCCTGCTGGACCAGAGGCTCCGTAAGGTCGCCCAGCTACGGGAGCTGATCCAGAGGAGTGGTCAGGGCCAGACAGGGCCCGATCAGAACCTCCTGATCAGAGGGGTCGCCGACCTCCTCCAGCCCTGGGAGATCTCCCTCTCCCTGAAGAAGGTGAGCTTCAGACCCAGCTCCCAGCCCAATGTCGTGACCTTCGGGGAGATCAGATTCCAGGAGCACAACCTCTGTCTTAATGTGGGGGGTTGTGGCCCAGAGGGACAGTTTTGTGCCCTCCACTCTGGGGAGCACTGTGGGAATGCCCAGCATGGGGGTGCAGGGGAAGTGAGAAGTACCCCCGATGGAGGGACTGGGCCGGGGCAGGATGTGACCTCACCGACAGGCAGTGGGAACCTGAGGGTTGTCAGGAAGATCCGCCTCTCTGCCAGGAGTGACGAGGAGTCGGGAGAAGAGAAGAAGTCATCCCCAAAAAGGAGACGCTGGCCTCCTAAGAGGGAGCCCTCTGACAGGGAGTCATCCCAGGATGAGGAGACAGAATCCCCTATATCTCAACCACGAGAAGAGGACCTCTTCCTGGCCACCTCCGCGTCGCTTAGCAACGGAGACTCTGAAGAGGACTTGAGGCACAGGACGAACAATTTCGGCGGCCGGCTGGGTTACGGGGTCATGAGCAAGAGGAAGCAACGCACCCTGGTCATGGTCTCTGGCCGTGAGCCCTGCTCCCCACCAGAGGGGGGCAGACTGAAGCACAGCAGCCTCAGTCCCTGCTGGAGCCTGGACAGTCAGGATGGAGGAGACAGCAGAGGCAGAGTGAGACAGTGTGAGTTCCCCAGGGAACTGCCATCTCCTAGCTACAGAACAATGGGCTCTCCCTCTCCTAAGGTCAGTCCTAGGGagccactgaccagctatagctGCATGGACCTCACCTCCAGAGAGTGCCCTCACTTGTGCCTCAGCGTGTCCTCTGATGACCACCAAATGGGCCCCACAGGGGACTCTGGCCATCCTCTTTCCCCAGCCGACAGCCTTGATTCCTGCTACACCTTCATCGTCAGCTCCCCCCGGGATCACAGCCTTAGAGGCTCCCTGAACCATGACCCCCGCCTGTCCAAGTCAGCGGCAGACTTGTCACGCAAGACCCGCCCACTGATCAACTGTAGGAGGGGGGAGCATGTGGGGGCCTGGAGGGTGAACAGGAGCAGCCtgacctccaccaccacctccatcccCCCGACACTAAGCCGAGGACACACCGTCTCTGAGGGTCTACAGAGCCCCACCGGGCGCAGAGACTCTGGGGTGTGGGGCCCAGTAGTCAAGAGGCAGAGTGGGATTATAGGGAGTACCAGCCGGGTGAGCAGGTGTCTCTCCATGTCGGTCATAGACTCTGCCTCTCAGGAGCAGCAGGGGAGAGGCTggggggacagaggggagaaaggagagccTGCTCTgacagagatggaagaggaaggagGCCACCTCCAGCCCCAGCTTGGGTGTCTGATCCGTCAGTTTGGTAAACAAGGCTCCGGCCGTGCAGACCTCACCCTGCCCAGCGGGGTCCACGCCACGCCCCAGGGGCAGCTTTTCGTGGTGGACTGTGGGAACGCCCGCGTCCAGGTGACCGACCCGCGAGGGAACGTCCTCCAGCAGGTGACCTCCACGACCTCCGAGGGCTCCGTTCGACGCTGCCGGAACTACTTCGACATCGCCGTCAACGCCAAGGGCCTGATCGCTCTGAGCTGTGCAGCGGAGCGCGCCCTCCTGGTGTTCAACCGCCACGGCCGTCTGCTCCAGACCTTCGGCGGGTTGGGGATGGGCGCCGCCAAGGACGAGCTGGAGGCCCCCCGGGGCGTGACGGTGACCCGGCTGGATGAGTTCCTCGTGGCGGACATCCGGAAAGGCACCCTGACCACCCTCAAGCTGGACCCCAAGACGGGCTCTCGGCTGGAGCGCACAGTGGTGACTGGTTTCCACAGGCCCTACCTGGTGGCTGCCTGCCTGAGCTCTGGCCTGGTGGCCGTGTCAGAGAGGGGTAGCGAGACGGGCCGGGAGCCCTGCGTCAAGGTGCTGGAGCCGGGCTGGAACACGGTGAGGGTCCTGGGGGTGTGTGCCGGCATGGGGCCCGTCCTGACCAGCCCCTGGGGGATCTGCATAGACAGGGATGGAGacgtggtggtggtggactggggCAGGCAACACAGGGTGGTGATGTACCCAGCCCAGGGGGTAGGCAGGCCTATAATCACCCAGGGGCTGAGCAGCCCACGAGGTCTGGCCCTGCTTCCTGAGGGGCATCTAGTGGTGTCAGACAGCATGCACCACTGTATCAAGATCTACCAGTACAAGTGATGTCACCAGAACACTGTGCAGCAATAACACTCCCACAGAATTATGAGAAGGGGACTTCCTGTTTCTTTGTTATATGCTGAGACTTTTCACCTAACCAAATGTGAACTGTTTTTTAACTGTAATTTCAGCTAGCCTGTTTGTTCTCCGTCTACAAAGTTCTCCGTCTGTAGCCCTTAGGGGTAACCTACATGATTTAACCTACATGACCTGTAGATGTCAGCATTGAGACATCAAAATCCAATTTATAAAGTCCCTTTCCCTAGAATCAAACAGTTTTTGGAACATCAAAAGTTTACAGTAGTTCCCAAGGGCGCTGTAATCAGAGTAAACACAAACATTCTGTACACTGATGTCATCAGCGTCACTGTCATGTGATTACTCATAAATCCTTACCATTCGTTACATTCACATGTTGTAAAGTTTGGACGTCTCTTATACTATTTCCCTGTTCAATGTGATTTTgctgtgtaaaaaaaatatatatatatctataaatGTTCCACACTGTCGTGTCATTATTTTCTGACGGCGTGACAATCCTGTAGGCTGGAGACTGTATACCTCCCTTCCCACTCAGCTTCAATCACAGCTCGTCTTTCTCTCACAGCAAAACAAAACCAAACAGCACATGCATATTCTCCATTCTAGGATGGAtttactgtgataaataactCTAGTAACTTCCAACAATGACTGTGCTGTGCagtccaactcctctcctcactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgaatgTCTACGATATGAAGGATGTCTCACAGAGGAAGCCGCTGCATCGTGTTACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076483 lncRNA upstream 48741 45620627 ~ 45621079 (+) True G1815066
TU2076478 lncRNA upstream 53125 45615307 ~ 45616695 (+) True G1815063
TU2076475 lncRNA upstream 54601 45613945 ~ 45615219 (+) False G1815063
TU2076442 lncRNA upstream 63381 45587741 ~ 45606439 (+) True LOC110501945
TU2076412 lncRNA upstream 111971 45556541 ~ 45557849 (+) True G1815022
TU2076462 lncRNA downstream 20180 45702195 ~ 45702733 (+) False G1815055
TU2076463 lncRNA downstream 20180 45702195 ~ 45702733 (+) True G1815055
TU2076544 lncRNA downstream 43024 45725039 ~ 45726328 (+) False G1815113
TU2076545 lncRNA downstream 98063 45780078 ~ 45780517 (+) False G1815114
TU2076546 lncRNA downstream 98063 45780078 ~ 45780517 (+) True G1815114
XM_036959420.1 mRNA upstream 13727 45606721 ~ 45656093 (+) False LOC110502172
XR_005038845.1 mRNA upstream 13727 45606721 ~ 45656093 (+) False LOC110502172
XR_005038846.1 mRNA upstream 13727 45606721 ~ 45656093 (+) True LOC110502172
XR_002470277.2 mRNA upstream 63319 45587722 ~ 45606501 (+) False LOC110501945
XM_036959600.1 mRNA upstream 141927 45526288 ~ 45527893 (+) False LOC110502177
XM_021579818.2 mRNA downstream 60838 45742853 ~ 45753090 (+) False gatd3a
XM_021579815.2 mRNA downstream 156720 45838735 ~ 45841019 (+) False LOC110501937
XM_021579816.2 mRNA downstream 156732 45838747 ~ 45841019 (+) True LOC110501937
XM_021579817.2 mRNA downstream 187293 45869308 ~ 45871541 (+) True LOC110501938
XM_036959425.1 mRNA downstream 250790 45932805 ~ 45940900 (+) False ercc1
TU2076385 other upstream 142380 45521920 ~ 45527440 (+) True LOC110502177
TU2076159 other upstream 494348 45172975 ~ 45175472 (+) True LOC110501942
TU2076178 other upstream 558591 45110547 ~ 45111229 (+) True G1814811
TU2074893 other upstream 1095899 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 1161769 44498457 ~ 44508051 (+) True G1813665
TU2076542 other downstream 43132 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 99484 45781499 ~ 45782536 (+) True G1815137
TU2077403 other downstream 476644 46158659 ~ 46169901 (+) True LOC110501947
TU2077416 other downstream 494592 46176607 ~ 46177757 (+) True G1815855
TU2077678 other downstream 652825 46334840 ~ 46335370 (+) True G1816074

Expression Profile