RNA id: XM_021579816.2


Basic Information

Item Value
RNA id XM_021579816.2
length 1952
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110501937
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45838735 ~ 45841019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGTTGTGATTGGGAGTAACAAGTGGATTGAACAGCGACACTTTCTCTGCACCGAGCTGCGCTctgcatctcgctctctctctctctcgACTATTGCGCTGTCCGAATAAACCTGAGGATCATCATGGACTCCGGTACCGGCCGAGTGTCTAGCCGACCTTCCTCTCCCGATGTGCACGATATGTTCCTGCATGCGGTGAAGAAACACATGGTGGGTTTCTCCGGTACTGTCTCGTCCACACAGAGCGACTCTCCACCGGAGATACCCGCGGACATGCGGAGCCTGTCGGATGACGACGATGACATTACCCTGAAAATGCTGTCGAAGAAGGACCGTAAACTGCTCTCGGAGAACGAGCTGCAGGGGATGCGGCTGAAAATCAACAGCCGGGAGCGGAAGAGGATGCACGACCTCAACATCGCCATGGACGGTCTCCGGGAGGTCATGCCTTACGCGCACGGGCCCTCGGTGCGCAAACTCTCCAAAATCGCTACTCTCCTTCTGGCGAGAAACTACATCCTGATGCTGAGCAACTCGCTGGAGGAGATGAAGAGGCTTGTCAGTGAGTTCTACGGCAGCGGCCACCACAGCAGCTTCCACCCCTCCGCATGTGGTACCATGGCGCACACTGGGCCCCTGCCTGGTCATCCGGCGGTTTCCCACGCCTCCCACCCGGTGCACCATCCACTTCTTCCCCCGGCAGTCTCCACGgttgcctctctctctacaacgGGTCTCACCTCGATCAGACCCCACCATGGACTCCTGAAGGCGCCCTCGGCCGTCCCGGGCCCCCTGGGTAGCAGTTTCCATCACTGGGGCGCGGGAATGCCCTGTCCATGCAGCATGTGCCAGGTGCCACCACATGTTTCCGGCATGAGCGCTGTCACAATGTCCAGGCTGACGAGTGACTCCAAATGACTTGAACTCTTATCATAAAacgagagggagaaaagggaaaTTAACTTTGGGTTGAAGACGTCACGGTGTATATCAGTCCAACACGTCTTTTTGATTTTTATTTATCTGTTGCTGAAATAAATGTTGGATTGAGCCAGCAGAAATGCATTGCTTTAGAAAATGGGAGGAGCGCTACTTACATACCATGTTGTAGCATGATTTAGATAAATATATAAAGGGTGCTTTTAATATTCAGTAAAACCCGTCACTGTATGCAAACCTATCTCACATTGTGTCTGACGGGAATACACATTATACGAAGGGCATTACTGATGTCTTTCAATGTCATGTTCTCGATCATTATTTAACTTTAGACTAGCGCATTCCCGAGACAGAATAAACGAAAGTACACTATGTAGGTAAAGCATACGGCTTGAGAACACAATGGTCATGTAGATTGTAAATTTGTAGATTCAGATTTCTGTTTGTACGATAGTTTTTATATCAGGCCCTTGGTTAATGTGTGGATTTACACTTTTAGCTTGTGTCTGCTTTCAGCCATGTAGCGCTGGTACCATGTTGCTCCTGCTTCTTCCTCCTGTACCATGTTGCTCCTGCTTCTTCCTCCTGTACCATGTTGCTCCTGCTTCCTCCTCCTGTACCATGTTGCTCCTGTTTCTTCCTCCTGTACCATGTTGCTCCTGTTTCTTCCTCCTGTACCATGTTGCTCCTGTTTCTTCCTCCTGTACCATGTTGCTCCTGTTTCTTCCTCTGCCACTTGTACAATATGTCCTTTCAGTATTTTCTCTCCAACGTCCCTGCCGATCCTATAGATGGCTGTTTTCTCATGTATGTTTCCTCTTtccatgttttgttgttgttgccaagCATGCCCGTCACAACGCACGCAAAGAATGATcacttctttatttttttataaaaaagtgctaaattatatttatttacttattttggATGGGATTTCAAATGAATCAATGACGATGATTATGTTGGGATTTTTacatgttaaataaaataagttTAATTGA

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0007400 neuroblast fate determination biological_process
GO:0007403 glial cell fate determination biological_process
GO:0021742 abducens nucleus development biological_process
GO:0021754 facial nucleus development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2077126 lncRNA upstream 2263 45836256 ~ 45836484 (+) True G1815600
TU2077124 lncRNA upstream 5043 45833438 ~ 45833704 (+) True G1815598
TU2077120 lncRNA upstream 17898 45820549 ~ 45820849 (+) True G1815594
TU2077117 lncRNA upstream 24579 45813956 ~ 45814168 (+) True G1815591
TU2077114 lncRNA upstream 42263 45796264 ~ 45796484 (+) True G1815588
TU2077152 lncRNA downstream 5081 45846100 ~ 45846317 (+) True G1815625
TU2077155 lncRNA downstream 6505 45847524 ~ 45847798 (+) True G1815628
TU2077164 lncRNA downstream 23964 45864983 ~ 45865209 (+) True G1815637
TU2077165 lncRNA downstream 27432 45868451 ~ 45868706 (+) True G1815638
TU2077184 lncRNA downstream 61787 45902806 ~ 45926479 (+) True G1815653
XM_021579818.2 mRNA upstream 85657 45742853 ~ 45753090 (+) False gatd3a
XM_021579811.2 mRNA upstream 156732 45669820 ~ 45682015 (+) False LOC110501934
XM_021579812.2 mRNA upstream 156732 45669820 ~ 45682015 (+) True LOC110501934
XR_005038845.1 mRNA upstream 182654 45606721 ~ 45656093 (+) False LOC110502172
XM_021579817.2 mRNA downstream 28289 45869308 ~ 45871541 (+) True LOC110501938
XM_036959425.1 mRNA downstream 91786 45932805 ~ 45940900 (+) False ercc1
XM_021579826.2 mRNA downstream 113344 45954363 ~ 45971125 (+) True LOC110501949
XM_036958496.1 mRNA downstream 140585 45981604 ~ 46008178 (+) False LOC100136162
NM_001124446.1 mRNA downstream 140748 45981767 ~ 45999824 (+) True LOC100136162
TU2076572 other upstream 56211 45781499 ~ 45782536 (+) True G1815137
TU2076542 other upstream 112419 45725147 ~ 45726328 (+) True G1815113
TU2076385 other upstream 311307 45521920 ~ 45527440 (+) True LOC110502177
TU2076159 other upstream 663275 45172975 ~ 45175472 (+) True LOC110501942
TU2076178 other upstream 727518 45110547 ~ 45111229 (+) True G1814811
TU2077403 other downstream 317640 46158659 ~ 46169901 (+) True LOC110501947
TU2077416 other downstream 335588 46176607 ~ 46177757 (+) True G1815855
TU2077678 other downstream 493821 46334840 ~ 46335370 (+) True G1816074
TU2077826 other downstream 911872 46752891 ~ 46770563 (+) True G1816206
TU2078392 other downstream 1243241 47084260 ~ 47085389 (+) True G1816706

Expression Profile