RNA id: XM_021579817.2


Basic Information

Item Value
RNA id XM_021579817.2
length 2234
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC110501938
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45869308 ~ 45871541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACAATTGCCTAGCGGGTTTGACTATGAGAAGTAGTAAATCAGGGTAGGTACAGTATATGTTGATATGGGGTGTTTCCCACACCTTGGGTGTTAAGTCCAGAGAGCAGAAGTCTGATTGGGTGTGAAGGGGAGGGGTCCGAGCAGCAGCAGAGTTAGGGGaggatgagatgtgatgtgagggGAGCGTTTAGCTCAGTTCAGCTCTGTCTGCCTTGTCGTTCTCTTCAGACAGCCGGGGGGGGGGAAGTGAGATGAAGGAGCACTGAAACTCCAGACactcacagaggagagacagagacagagacagctttCAACACGTAGAGAACTCTGGAAGACTTgtgacaccaacactgagaccGACGGGTCACTTACTGACTCATCATACTGTTGGCTGGGTCATTTTTTCCTTTCTATTCAGTGAGGCAAAGAAGATTCTTCCACAGCCAAGGAGTGACGTCAACACTGGACCAGAATGTCAGGACAGTGTGGGACTAACTGGTTAATGGAAGAGGAGTAAAGCTGAATTGCTTGATTGCAGAACTGAGCACTCACAGAAGACTGACTCTTCTTCGCTTGTGTGACGCGTAGGTTTCATCTCAGACAAGTCTCCAGTGTAGTTTTTCTGTCGTCTCAGACATAGCCATCTCCAGTGTGGATCAGGACCATGAATGTTTTACCTAACCCCATGACCAGGGCCCATCAGGAgcagcctctccctctctgctcccagGGGGCCCACCTCCAGGACTTCTCCTCCAGGTGTCCTCTAGGGCTTGGTGCTGGTCATGGGGGCAGGCTTAGGGCCATGGGGGGGCCTCTGGGGCCCCAGAGACCAGGCAAGCCACCGCGGGAGCTGAGCCCCGAAGAGCAGCAGGATCTAAGGAGGAAGATCAACAGccgggagaggaagaggatgcagGACCTGAACGTCGCCATGGACGCTCTGAGGGAGGTGATGGTGCCTtacgcctcctcctctccttcctcctcgtcctcctcccagGGGCCACACTCCCACCAGCAGCAGCCAGGGACCCCACCTGGACGCAGGCTCTCCAAAATCTCCACCTTGGTCCTGGCCCGTAACTACATCCTCCTCCTGGGCTCGTCTCTGCAAGAGATGCGCCGGCTCCTGGGGGAGGTGAGTGTTGGGGTGGGGGTTGGTGTGGGGGTGAACACGGGGCCTGTCCCCAGGCTGCTACTGGCCGGGGGTTGGCCCCTCCTCACCGGCCCCAGTCAGCTTCTCCTCTCCCCAGAATCTCTCCTGACctcagcctcctcctcctcctcctcctccaagtgTCCTCTGTTGCCTCCTGGCCACTTGGAGGGCCCCATGGCCCCAGTGCAGTGGGGCTCAGCTGGGGCTCCTGGAGGGCCACTCTGCCCCTGTGTGGTGTGCAGGCTGCCCAGATTCAGCCACCCCAGCCCTGGACCCAGGTTCCCCAAGTGAAGGCTTGCTGGGACCACCTCTCATGTGTTCTTCTGGTCTGCTACAATGACTGATTCTTCTGAGCGGATGGACTTCTGGTTATGGTTTATTATCTTATTTTTCTGGAGATCTTgacatgttattttttttaatattagtattatcttttttttttgttgactaATTCAATTATAACTTTGTTGTAATGGACTTTGTCCATTAGGCTTTTATGAATATCTTGTGGACAGATGAATCTGTCAAGGCTCATGTATAATTGTGTGATGCAAGCAGCAGTAGTTCCTAGTTTGGGGGTTTTGTTGTTAATTATTTGGACAAATGAGGATTAGGCGAAGGTGGTTTTTAAATGGGTGTAGTGATTTTCAAGCCCGTGTGCAGATGAAAAATAatttccacagccacaaagtcaattTTGGCTGTatcgtaaaaatgtatgaaaactaAAATGCGCTTTTTGGGCATGTTAAAAACACGGGTGAAAATCGCAGAAGGGAGGGGTTTGGCCGAGAGTTTCCatttgagagggaggagacatCACTTCCTTCCCTTGCACAAAGGTTATCACAATTGTTAACGGCATTTCCCGGAAGTAAAACTTACAAAACTTTCACAACATACTTTTACTTCCGGGTAACCGAGATTAGTTTTTGAAATTATTGGTGACTGTGGTCAGTAAAAGTcaatgtattttagattttatGAACAAATTCTATTTTATATGATAATAGATGAAGCTACGTGTAAGTTCTAACACAGACAATAAATAGAAATGTACTGTTTA

Function

GO: NA

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2077165 lncRNA upstream 602 45868451 ~ 45868706 (+) True G1815638
TU2077164 lncRNA upstream 4099 45864983 ~ 45865209 (+) True G1815637
TU2077155 lncRNA upstream 21510 45847524 ~ 45847798 (+) True G1815628
TU2077152 lncRNA upstream 22991 45846100 ~ 45846317 (+) True G1815625
TU2077126 lncRNA upstream 32824 45836256 ~ 45836484 (+) True G1815600
TU2077184 lncRNA downstream 31265 45902806 ~ 45926479 (+) True G1815653
TU2077198 lncRNA downstream 56267 45927808 ~ 45928285 (+) True G1815667
TU2077187 lncRNA downstream 62536 45934077 ~ 45940891 (+) True ercc1
TU2077188 lncRNA downstream 70374 45941915 ~ 45943882 (+) True G1815657
TU2077170 lncRNA downstream 74681 45946222 ~ 45948045 (+) True G1815643
XM_021579815.2 mRNA upstream 28289 45838735 ~ 45841019 (+) False LOC110501937
XM_021579816.2 mRNA upstream 28289 45838747 ~ 45841019 (+) True LOC110501937
XM_021579818.2 mRNA upstream 116218 45742853 ~ 45753090 (+) False gatd3a
XM_021579811.2 mRNA upstream 187293 45669820 ~ 45682015 (+) False LOC110501934
XM_021579812.2 mRNA upstream 187293 45669820 ~ 45682015 (+) True LOC110501934
XM_036959425.1 mRNA downstream 61264 45932805 ~ 45940900 (+) False ercc1
XM_021579826.2 mRNA downstream 82822 45954363 ~ 45971125 (+) True LOC110501949
XM_036958496.1 mRNA downstream 110063 45981604 ~ 46008178 (+) False LOC100136162
NM_001124446.1 mRNA downstream 110226 45981767 ~ 45999824 (+) True LOC100136162
XM_021579825.2 mRNA downstream 157008 46028549 ~ 46088009 (+) False LOC110501948
TU2076572 other upstream 86772 45781499 ~ 45782536 (+) True G1815137
TU2076542 other upstream 142980 45725147 ~ 45726328 (+) True G1815113
TU2076385 other upstream 341868 45521920 ~ 45527440 (+) True LOC110502177
TU2076159 other upstream 693836 45172975 ~ 45175472 (+) True LOC110501942
TU2076178 other upstream 758079 45110547 ~ 45111229 (+) True G1814811
TU2077403 other downstream 287118 46158659 ~ 46169901 (+) True LOC110501947
TU2077416 other downstream 305066 46176607 ~ 46177757 (+) True G1815855
TU2077678 other downstream 463299 46334840 ~ 46335370 (+) True G1816074
TU2077826 other downstream 881350 46752891 ~ 46770563 (+) True G1816206
TU2078392 other downstream 1212719 47084260 ~ 47085389 (+) True G1816706

Expression Profile