RNA id: XM_021579825.2


Basic Information

Item Value
RNA id XM_021579825.2
length 2753
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC110501948
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46028549 ~ 46088009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTGCTGCTGGAGCGATCAGGAGAATGTTCTGCAGGGctgcgagagagaggtagaggttcGCGTCGCTTCTTGCCTCTTCTGTTCCCTCTCTTCTTTTTAACGTCGAAGAAGGTTGTTTAGAGCCGCGCTCCAACAAAGGTTTCTGAACAATTGAGAAATAATGCAAACTAAATATGTTGTTATCCTTTGAGATGGAGAAGAATTCAACAGAAGATGACTGCGTGGATTCAGGAGCAGAGACTGGAGGGTCTGATTACAGTCCCATGTCTTCAgcgagcaGTGAGTTATCCATGGTGGAGCTGCAGGATCCCTTCCTGGTCAGTGTTCACCTCATTACTGACCCGGGCCAGGCCAAGTCCCTGCAGCATGCTGCCGACACTGTCCTGGCCTGGGTCCACCCTGAACTGCAGCTCTTCCGCGTCTCCGAGAGAGCCGCCTGGCAACAAAAACCCAAGCGCCAATCATGTCATGCTTCGGCATCTTTTTCAGCCAATCACGGCCCTCCGCAGTGCCAGCCGGCGCTGGCCGTCATCCTCTTCCTGCAGGAGCAGTACGGGGGTGAGGATCAGATCGTGACGTTACACCGTGCTCTCCAGCGCCCCCCCTGGCACTTCCACCACACCGAGAGGGTCAACAACGGCCGTAGAATGCTCCCGCTTACTCCCTGCAGCCAAGACTTCTTCACCCTGGCCCCGGGGACTCCTCTGTGGGCGGTTCGCCAGGTTCACTACGGAAAAGAGATTGTACGCTTCACAGTCTACTGCCGTTACGAGAGCTTCCGGGACATGGTGCGCATGTACCGGATGATCCTCCAGAGGAAGCTGGCCCAGAGGAAAGAAGACTTTTGTTTTTTCGTTGTGTACTCCAACCCGGATACCGAGATCCAGCTGTCATTCAAGCGGTTGCCGAGGGGCCAGAGCCCCGCTCCTACGGAGTCGGCGGTGATAGAGCTGAGGGTGAGGGACGTTGGGGCGTTGGTGCCCCTCCTGCCGTACCCCTGTACCCCCATCAGTGAGGTACGCTGGCAGACTGAAGACTACGACGGGAATAAGATACTGCTGCAGgtcCTGTGTGCACGCTACAAACGTAGACATACTATCGACCAGCCAGGAGACTCCTCCCCTGCCCCCTCGCCGCTGCCCACTGACCCAGCCATGACTCTGCCCTCAGCGGGCACATATGGCCGGGGACCTGCCTCCTACAGGAACCGGCGCTACCACCGTAACTCGTCCCGCTCCCGGACCCAAACCCTGCCCCTGCcacagacccagaaccagacccaatGCAGGTCCAGCCAGGCCTCACAAACCTCCCTTTCCTTGGCCTGTGAAGAGGAGGAAATGGAGATGGGGGCTCGCTCTAAATCCTGGAGGACCGGTCGAACCCGCTCTCTGTTCTCCCTGCCCAGCCTGGCAGGGTTCACCGGCTCTCGCTCCCGCTCTGCCGGGTCCTCCCCCGGAACCTCACCCAGCCCTACCCACCACAGAAGCCACTCCCACTCCCTTAGCTCCTCCCTGGTCCCACCCTTCCGTCTCAACGTGGATGCTCTGATTGGTGCGGAGGAGACGGATGTGGACACAGGGATAAAAGTGGATGCGGGCAGCATTGTTGACCTGTCGGTAGTGTCTGCATACTCTAGGAGTCGCAGACCCACGCCACCACgccctctctctgcacctccgCGGGACCCAACCTCCTCCCCATCCCACGCCAACGTCAAGCCCAAGGCGTCAACGCTAGGCCGCCCTCCTGTTCCCATGAGAACCAGCAGCCTGGCCTCCTCCAATAGCATACCTTCCACCCTGCAGCGACCACGCCCCAACAGCGCTTTCTTGCCCCTGAGTGGCCAGCCTTCCCTGAGGGATCCCATCACGCGCAGCCAATTGGACAGCTCTAACAGCATTATTGGGGTGGTGTCTCAGAACAGGTCTGGCAAGGAGGTTGGGGTGGAGGACGACGACCAGGAGTTCTATATCTGACCAGTTAGTGGCGCTAGAGAGACACGCCGGCCAGCAGGAAGGGACAGGGACACTGAGTGACAACacagctctgttctgctctgccacCTGGGGGCTGGTTTAAGTCAGTGCAGAGGACAGTACAGTGGTTGTAGATAGACGCTTCATTCAACTTCTTCATGACATCTTTGTGTTTCTACATAGTTTCTAACTAGATGTTTGTGCTATTTGTTATTTAATCAAGTTGTGGTATAAATGTGTAGCGCTTACTGAGATGGCTTAAAAACACATTGCAGACTACTCATATTAAACAGAGATGTTATGAAACCAGACCTATTGGACATAAATTAGATCTAAAACAGAGATGTTATGAAACTATTGGACATAGTTCTAACAGGACACGGCAGCTATACGACAGGCTCTATCTCAATTAATCTATCCTtgattcctctctcctcacctccttctcaacgGTATTGGAGGCGAAGGTCCAAGGTTACTCCTCTTTGACCTTCTTCTCCAATCCGTTTAGCGAAAAGGAAGTTGAGGAGGTAGGATGCAAGGAATCGAGGAAAGaccaaatgagaaaaaaaaactgatTCTGACACTTTTGGTGCAGTGGGTCCCTCTGGTGGTGATAGACGGCTAAACAGAATCTAGTTTAAAGTAGTAGTCGGTAATATGGGATGCTTTTGATTTTAACTGATTATTTCTATGTTCACCAAACTTTTTAATATTGATTAAAACATCAGATTATGTAtgaattaataaaaataaatacaaaatgaatGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2077331 lncRNA upstream 13278 46015020 ~ 46015271 (+) True G1815783
TU2077233 lncRNA upstream 41533 45986629 ~ 45987016 (+) True G1815695
TU2077170 lncRNA upstream 80504 45946222 ~ 45948045 (+) True G1815643
TU2077188 lncRNA upstream 84667 45941915 ~ 45943882 (+) True G1815657
TU2077187 lncRNA upstream 87658 45934077 ~ 45940891 (+) True ercc1
TU2077372 lncRNA downstream 6465 46094474 ~ 46096239 (+) True G1815816
TU2077383 lncRNA downstream 30244 46118253 ~ 46120092 (+) False G1815826
TU2077385 lncRNA downstream 30323 46118332 ~ 46120092 (+) True G1815826
TU2077410 lncRNA downstream 85083 46173092 ~ 46173357 (+) True G1815850
TU2077411 lncRNA downstream 86837 46174846 ~ 46175090 (+) True G1815851
XM_036958496.1 mRNA upstream 20371 45981604 ~ 46008178 (+) False LOC100136162
NM_001124446.1 mRNA upstream 28725 45981767 ~ 45999824 (+) True LOC100136162
XM_021579826.2 mRNA upstream 57424 45954363 ~ 45971125 (+) True LOC110501949
XM_036959425.1 mRNA upstream 87649 45932805 ~ 45940900 (+) False ercc1
XM_021579817.2 mRNA upstream 157008 45869308 ~ 45871541 (+) True LOC110501938
XM_036959426.1 mRNA downstream 19285 46107294 ~ 46115457 (+) True serpine3
XM_036959432.1 mRNA downstream 69203 46157212 ~ 46169823 (+) False LOC110501947
XM_036959431.1 mRNA downstream 70162 46158171 ~ 46169823 (+) False LOC110501947
XM_036959428.1 mRNA downstream 70910 46158919 ~ 46170323 (+) False LOC110501947
XM_036959429.1 mRNA downstream 71187 46159196 ~ 46169823 (+) False LOC110501947
TU2076572 other upstream 246013 45781499 ~ 45782536 (+) True G1815137
TU2076542 other upstream 302221 45725147 ~ 45726328 (+) True G1815113
TU2076385 other upstream 501109 45521920 ~ 45527440 (+) True LOC110502177
TU2076159 other upstream 853077 45172975 ~ 45175472 (+) True LOC110501942
TU2076178 other upstream 917320 45110547 ~ 45111229 (+) True G1814811
TU2077403 other downstream 70650 46158659 ~ 46169901 (+) True LOC110501947
TU2077416 other downstream 88598 46176607 ~ 46177757 (+) True G1815855
TU2077678 other downstream 246831 46334840 ~ 46335370 (+) True G1816074
TU2077826 other downstream 664882 46752891 ~ 46770563 (+) True G1816206
TU2078392 other downstream 996251 47084260 ~ 47085389 (+) True G1816706

Expression Profile