RNA id: XR_005038846.1


Basic Information

Item Value
RNA id XR_005038846.1
length 5076
RNA type mRNA
GC content 0.59
exon number 12
gene id LOC110502172
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45606721 ~ 45656093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatccctcctcctctcctgactcccctcctccacctctcctgacCTTCTCCGCCTCTCCTGAACCGCCACCTCCTCTCCTGAACCCTCTCTCaaccccttccttctctcctacCCTGTAGTTCATGTGCCAGggcctctcttcccccctcttctctgAACCCTGATCTCTGACCCTTGATCCCTCTGGAGGTCAGGATGAGTTGGCTGAGCCGGCTGACCCCTCGAGGTCCGGGGGGCAGGTCCAGTAGGAACGTAGCACCCTCCAGTCCCTGTACTGCTGACCCAGAGACCTGCCTCATGGTGTTCGAGAACCACTGGAGACAGGTGTCCTGGGTGCTGGAGCAGCAGGATCCGTCAAGCTCTAGCGATGACCTCACCGCGGTGCGGAACCACACCGACCAGATGCTGTGCCTCCTGGCCGAGGAGCGACCGGGGGAGTGTGAGGGACCCCCCGGGGCGGTAACGTCCGGTAACGTCCCCCCCATTGGCCCCATCCTGGACCTGGTGGTGTCTGAGAACGTCCTGGAGCGTGTGGTGCAGTGGCACCTGAGGCGTGGCCTGGACCCCGACAGCCAGGGGGCGTTGCTCAAGCTGTTCGAGATGCTGATAGGCCAGTCTCAGCAGCCCTTGCTCCAACACAAGGCGGTGCTGCAACCTCTACTGGGTCTTCTGGGGGCCTGTGCTGAGCCCCAGCTGGGCTGCCCTCCCTCTCTGGAGAACAGCCTAGTGCTGCTGCTCAACCAGATCTGTGTGTCGATGGCGCGTGCTCCTGCTGTGTTGGAGCTGTTGTTCAGGTCGGCCCCGGCCCAACACGGTCCGACCAACCTGCTCATCTTCTCCCTGCTGGTTCCCTTCATCCACCGTGACGGGGCCATCGGACAGCAGGCCCGCGACGCCCTCCTCCTCGTCATGGCAACCTCCGCCAGCAACCAGGGCGTGGCACGCTACATTGCTGAGAACTCCTACTTCTGCCCGgtgcTGGCCACGGGACTCAGTGCTCTCTACTCCTCCCTGCCGAGGAAGATAGAGGTACGGGGGGATGACTGGCACGCTCTGCGCAGGGAGGACTGGATGGGCGTGTCTTCTCTGGTGCTCTTCATGAACTCTCTGGAGTTCTGTAACGCTGTCATCCAGGTGGCTCACCCCCTGGTCCGCAGACAGCTGGTCGACTACGTTCACAACGGCTTCCTGGTCCCGGTCATGGGACCCGCCCTACacaagTCATCTGTAGATGAGATGATAGCCAGTACAACCTACCTGGACCTGTTCCTGCGCAGCGTCACGGAAACGTCTCTTCTTAAAACGTTCCTGCGTTTTATCCTCATGCATCGCCACGACAACGACACCATCCTGGACACGTTGCTAACGCGCATCAGCAGCAACTCGAGGCTGTGTATGGTGTCTTTGAGCCTGTTTAGgactctgctctctctcaactGTGAAGACCTCATGTTGCAGCTCGTTCTCAgGTATCTGCTGCCCTGTACCCATGTGATGTTGAGTCAGAGGCGTGCCATCAGGGACACTGATCTCTATGGTAAATCAGCTGACAAGTTCCTGTCCCTGATCCCCGACTGCTGCCGTCTGAGCACAGCGCCCTCTGCTGAGCGGGAGGAAGAACCTGCCCTTTGGGGGAAAGtcctgaACAGCCCCAGCTCGGAGTCTCCAGTACACCACAAACCCAGCACTCCATCCCGCTTGGCCCTCTTCATGCGCCAGCAGAGCACTGGAGGAGggccctccaccccctcccccacCGAGACGGTCCCCTCGTCGCCCGGTGCCGGCCCCAACACCCCCCTGTCCCCAGATAGCCCCATGCACCCCGTCCCAGAGGGGCTGGACTGGGAGTCGGGGTACCTGGAGTACCTCAGGGACGCACGTAGGGGGGTAGAGCTGTGCTCCTGGGCCTGCCGGAACTGGTCAGCCCCCTACGACGGAGAGGACCCCTCACCCAACACGGCCCCTCTACCgccccctccccctacctccaaCCCCTCCCTGGCCATGTTCCCAGAGCACTTCTCCTTCCAGCAGGGTGGTAGTACCTCCCCCGGCCAGCAGAGGGCAGCGGTGGTGGCAGCAGCGCGGTCAGAGTGGAGCAGTACAGAGAGGGACAGTGGAGAGTGGGACGTCACCATCGGTAAGAACAGCTGTATCAGCCTCACACCCCGCACCAAGAAACGCAGCCTGCAGAGAGAGGAGGTCCACCTCCCCaaacctctccatctccctcctgattctgcctcGCTCCCTGACCCCTCCGCTGTTCCCCACCTCCACTCCGCCCCCACCAAGGGCGCTCAGCAGGCCATCATCAATGGGACGTTGTTGGGGGAGCAGGGGGACAgccaggatggagggatggaggttaaGAAGGTGAAGAGAGAGTTGGGCGAGCAGCGGCCCCCTGCTGGGGGGGACTCTAGTCAGAACGGGGAGGTGAGTGCCTGCCCTGCCCCTGCCCAGTCCTGCGGGTCCCTACAGGGCTTCTACGGTGaagggaatgggagtggagctgcGGAAAGCTCCAGAGGTCTTCCACCACACAAACCGAGTCACACCCAGACTCCGTCTGCTTCACTGCTCTCAGAACCCCGTGCCAACTCCTCCAACGACAGGCTGACCCTCTGTGCTGCAGCATCCAGCCCTGGATCGGGACCTCCAGAGGCAATGCTCTTTAACCAGTCAGAAGCAGTGGAGCGACTGATCTCTGAGCTCCTGGATGGGGCTGGGCCTGGGGAGGGGGGCCAGCAGGGGCCTGGGGACTCTAACGGCCAGGGCATCAGCATCGAGGCCTTCACCCAGGAACTCCGGGAGCTGGAGGACAGGGTAAGGGAGAGGAGCAAGGGGGTGgggctgctcagacagctggagGAGACCACCAGAGACCCCCACTCAGGGGAACCACCGCCCCCCTCTCCCCTGGACGCTGACCTGATGGGGAGCGGGGTAGTGGCTGGAGTTGTGGGGGTGTTCAGGCCTCTAGGACAGCCATCCACTCAGCCCTACACAGGTCCGTTCATGGTGGTTCTGTTTGCCAAGCTGGAAAACATGCTCCAGAACTCTCTGTATGTAAACATCCTGTTGACGGGTATTCTGGGCCAGCTTGCCTGCTACCCTCAACCCCTGCTCCGATCTTTCCTCCTCAACACCAACATGGTGTTCCAGCCCAGCGTCAAGTCTCTCATACAGgTCCTGGGCTCAGTGAAGAGCCGCATCGAGACGTTTGCAGCGTCCCATGAGGACTTCCCTGCCATGCTGAAGAAAGCCCAGCGCTACCTGGCTGCCAGGGGCAAGGTGGACTGGGCGGACTCACCCATGGGGATGCCCACACTGCGACGCTCTGATTCTCTGGTGAAGAGCCGGAAACCCTCACTAGGCGACCTGATCCTTCGCCACACCAACAGCCCCACGCGGGCACGCCACGCCGCCCAGCTCGCCCTGGCCCACGTACGAGACGGCGGCCAATCGCTGCACAGTGCCCTGTTCCGGGGCGGGTCAGGGGCGTCGGGGCTGGAGAAGCAGGCAGAGGCTCTGAGGGTGAAGAACGCCGTCTACTGCGCCGTCATCTTCTCCGAGTTCCTCAAGGAGCTGGCCGCTCTGGCCCAGGAGCACGCTGTCTCCATGCCCTTCCTCCAGAGCCACGACACTGAGGAGTGATGCTGTCTGTCTCCACACCCTTCCTCCAGAGCCACGACACCGAGGAGTGATGCTGTGTCTCCATCCCCTTCCTCCAGAGACATGACACCGAGGAGTGATGCTGTCTGTCTCCATGCCCTTCCTCCAGAGCCACGACACTGAGGAGTGATGCTGTCTGTCTCCACACCCTTCCTCCAGAGCCACGACACCGAGGAGTGATGCTGTGTCTCCATCCCCTTCCTCCAGAGACACGACACCGAGGAGTGATGCTGTCTGTCTCCATGCCCTTCCTCCAGAGACACGACACCGAGGAGTGATGCTGTCTGTCTCCATGCCCTTCCTCCAGAGACACGACACCGAGGAGTGATGCTGTCTGTCTCCACGCCCTTCCTCCAGAGACGTGACACTGAAGGTTGCAACCCGATTTCAACCCTCCTCCCAGAAGATTGAGAAGCATTGGATTGGTTGTAAGCGTTGTCTGGAGGGAGTTCCTTTCCACCGTTGTTAAATCTAGTGTACGTGACGTctgggcctgtatccacaaagtGTCTAAAAGACAGACGGGATAGGGCAGGTagactgacacagacagacagacagtggtttGGATAGCGCAGGTagactgacacagacagacagacagacagagacagacaggatagGACAGGTATACTGACACAAGAGACAGTGGTTAGGACAGGTAGACTGACACAAGAGACCGTGGTTAGGACAGGTAGACTGACACGCGAGACAGTGGTTAGGATAGGACAGGCAGACTGACACGTGAGACAGTGGTTAGGATAGGACAGGTAGACTGACACGTGAGACAGTGGTTAGGATAGGACAGGTAGACTGACACAAGAGACAGTGGTTAGGATAGGACAGGTAGACTGACACGAGACAGTGGTTAGGATAGGACAGGTAGACTGACACTCGACAGTGGTTAGGATAGGACAGGTAGACTGACACGTGAGACAGTATTTAGGATAGGACAGGTAGACTGACGGGGAACTGGCATCAGTTTAGAATTTTACATCATAACGAATAAGATTGTATGAACAGATCCTAGATCGGCACTCCTTCTCTAGGACACTGTGACCATATATGGACAGATTCTAGATCGGCACTCCTTCTCTAGGACACTGTGACCATATATGGACACATCCTAGATCGGCACTCCTTCTCTAGGACACTGTGACcatatatggacagatcctagatcgaCACTCCTTCTCTAGGACACTGTGACcttatatggacagatcctagatcagcaatccTTCTCTAGGACACTGTGACcatatatggacagatcctagatcggCACTCCTTCTCTAGGACACTGTGACcttatatggacagatcctagatcagcaatccTTCTCTAGGACACTGTGACcatatatggacagatcctagatcggCACTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076442 lncRNA upstream 282 45587741 ~ 45606439 (+) True LOC110501945
TU2076412 lncRNA upstream 48872 45556541 ~ 45557849 (+) True G1815022
TU2076406 lncRNA upstream 57685 45548818 ~ 45549036 (+) True G1815017
TU2076405 lncRNA upstream 58123 45548376 ~ 45548598 (+) True G1815016
TU2076320 lncRNA upstream 135605 45469548 ~ 45471116 (+) True G1814941
TU2076462 lncRNA downstream 46102 45702195 ~ 45702733 (+) False G1815055
TU2076463 lncRNA downstream 46102 45702195 ~ 45702733 (+) True G1815055
TU2076544 lncRNA downstream 68946 45725039 ~ 45726328 (+) False G1815113
TU2076545 lncRNA downstream 123985 45780078 ~ 45780517 (+) False G1815114
TU2076546 lncRNA downstream 123985 45780078 ~ 45780517 (+) True G1815114
XR_002470277.2 mRNA upstream 220 45587722 ~ 45606501 (+) False LOC110501945
XM_036959600.1 mRNA upstream 78828 45526288 ~ 45527893 (+) False LOC110502177
XM_036959599.1 mRNA upstream 92958 45511851 ~ 45513763 (+) True LOC118943643
XM_036959414.1 mRNA upstream 277680 45327109 ~ 45329041 (+) True LOC110502173
XM_036959413.1 mRNA upstream 339132 45262215 ~ 45267589 (+) True LOC110502139
XM_021579811.2 mRNA downstream 13727 45669820 ~ 45682015 (+) False LOC110501934
XM_021579812.2 mRNA downstream 13727 45669820 ~ 45682015 (+) True LOC110501934
XM_021579818.2 mRNA downstream 86760 45742853 ~ 45753090 (+) False gatd3a
XM_021579815.2 mRNA downstream 182642 45838735 ~ 45841019 (+) False LOC110501937
XM_021579816.2 mRNA downstream 182654 45838747 ~ 45841019 (+) True LOC110501937
TU2076385 other upstream 79281 45521920 ~ 45527440 (+) True LOC110502177
TU2076159 other upstream 431249 45172975 ~ 45175472 (+) True LOC110501942
TU2076178 other upstream 495492 45110547 ~ 45111229 (+) True G1814811
TU2074893 other upstream 1032800 44566888 ~ 44573921 (+) True LOC110501918
TU2074885 other upstream 1098670 44498457 ~ 44508051 (+) True G1813665
TU2076542 other downstream 69054 45725147 ~ 45726328 (+) True G1815113
TU2076572 other downstream 125406 45781499 ~ 45782536 (+) True G1815137
TU2077403 other downstream 502566 46158659 ~ 46169901 (+) True LOC110501947
TU2077416 other downstream 520514 46176607 ~ 46177757 (+) True G1815855
TU2077678 other downstream 678747 46334840 ~ 46335370 (+) True G1816074

Expression Profile