XLOC_003711 (foxg1b)


Basic Information

Item Value
gene id XLOC_003711
gene name foxg1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43114108 ~ 43116249 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007184
CATGCATGCAGTGTCCCCGTTCTCGCGCGCCTGACCGCTCGTCTTTTAACGTACAAAACGGGGCTTTTACGCGCATTTATCACCCGGCATGGGAGACCAGAGTGAGCCGACCATGGTGCAGAAGTCGACTTCATTCAGCATCAAGAGCCTGTTACTTCCTTCGAAGTTTGACAGCGCTGATGAGAGCGCAGAGCGCGGCGGGAGCCCGGCACCCGTGCAAGACCTAGACAAACCCCCGGAAGACGCAGAGATGGACAATGCGCAACGCGACGCGGAGGAGCCCGAACTGCAGACCAAAAAGGGAAAGAAATTCGACAAGCCTCCGTTCAGCTATAACGCGCTCATCATGATGGCAATCAGACAGAGCCCCGAGAAGCGGCTCACGCTCAACGGCATCTACGAGTTTATCATGAAAAACTTCCCGTATTACCGGGAACACAAACAGGGCTGGCAGAACTCCATCCGGCACAATTTAAGCTTGAATAAGTGTTTTGTGAAGGTTCCGCGGCATTACGACGATCCTGGGAAAGGGAACTACTGGATGCTGGACCCTTCCAGCGATGACGTGTTTATCGGCGGAACCACCGGGAAGCTCCGCCGCCGCTCCGCGACCTCGCGGGGGAAGCTGGTGATGAAACGCGGCCTCCGCTTCGCACCGCTCGGACTCGGTCTGGGCGAGCGCCCGAGCAACCCGTTGTACTGGCAGCTGTCTCCGTTTTTACCACTGCACCACTCGCATTACAACGGCTCCGCGCACGGATTTCTAAACCAAGGACACACGTACGGAACTTTACTACCCGGCGTGGAGCCGCTCGGGAACGGGGATATGTCTCGCCAAATTCTGGGAGCTTCTAGCGGGAGTATCAACCTGTCGAACGGTTACGGAGTGTCTCCGCCGGCTGCTGGATTACTCTCAGGGCACAATGGATACTTTGTACCGGGCGCGCAGCAGCCGCAGTCGCTCCCGAGCGCGCCAGGTTACGGCATCTCCAGCTCTCAGTCGCCGCTGCTGTCGGATTCTCTAAGAACTAGTTTGCCGTCCTTCACATCACCGCTTTCCGGCGGACTCCTGTCTCAGCACAAACGCGTCGCGCCCAATTCATTCCTGAGCTGAGCGCTACGCGTCCTCCTCTCCAATGGGAATATCCAGACTTTCCTAGAAAACCTCGCCgggaaaccttttttttttgtgtgtgtgcggactctgtgaatttaatttaattttgtctaTTTAAGCTCGTTTTTGTAATGGTAGTACGAAGTTATGCCAAAGGCAATAAccgtgtttgtttttctttttaaaaaaagtcttatttattagtatttcatCGCGAATGATTCTTTTGTATTTATTCTAAAAATGTTGActgttcttatttttattatcccTTTGTTATTGTGGGAtactgctgttattattattagatggATAGCACATATTATTCGTTTAGTAAGACtaattccttttttaatattattattatttaagatttaaTGTCCCAAACTGTGAATGCGCCTTAATATCTTAAATCAGGGTTGAGCGTTCGGTCTGACTCAGGTGTGCGTTCTGACAATCAAACACTGGTCATGTTATTAATAGCTGTGTAAACctaaatataaatctatatgCAATGTCTTCGCCCGAGAGTGTGGGCCTGTGTTCATAGAGGATGATCTATTACAGTGAAGCCAAGCTACTGAAGCAAACAGCACTGGTTTAAATGAGCTCTGTTTGTGGGATGAGTTTATAAATgtgtgtactgtctctttaaatacTGTTCTGTGAAGTGCAGCTGATGATATTTACACACACCGcagtatttaaatacagttttaccCGTGAAGATGGTTCATCACCAAAGACAGATCATTCTCAAACATAACATCTCTCCATTCTGATTTGCCACATGACAATCTGAACCATTATTTCAGCTCTCTGTGCGAACACACGGGTGTTTATCAGAAATGTGATTTCTACAATTGTTTATTTCCCTTTTGACCACCATGTGATTAGCTATGCTGCACCTTTTGTTTTGCTAGTCATTTAATGTTCTGCATTTGTTTGTCATCTAGTTTGTCTTGTATATAAACTGCCTGAACTTGAGTTCAGAACAAAGAAATAAAGTATTGAAATATTTCTGT

Function

symbol description
foxg1b Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in anterior neural plate; immature eye; retina; and telencephalon.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2437 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in anterior neural plate; immature eye; retina; and telencephalon.

Ensembl:

ensembl_id ENSDARG00000032705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007184 True 2142 mRNA 0.47 1 43114108 43116249

Neighbor

gene id symbol gene type direction distance location
XLOC_003710 CABZ01080006.1 coding upstream 36767 43070883 ~ 43077341 (+)
XLOC_003708 NA coding upstream 66087 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 coding upstream 69159 43044826 ~ 43044949 (+)
XLOC_003707 NA coding upstream 230810 42839850 ~ 42883298 (+)
XLOC_003705 tdrd3 coding upstream 294378 42726712 ~ 42819730 (+)
XLOC_003712 CABZ01058277.1 coding downstream 179026 43295275 ~ 43297633 (+)
XLOC_003713 CU929458.1 coding downstream 246826 43363075 ~ 43368382 (+)
XLOC_003714 sult6b1 coding downstream 259077 43375326 ~ 43388063 (+)
XLOC_003715 vipb coding downstream 284952 43401201 ~ 43414172 (+)
XLOC_003716 slc29a1b coding downstream 303560 43419809 ~ 43458612 (+)
XLOC_003369 CR854846.2 misc upstream 26991026 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 30402112 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 30419845 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 30428509 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 30434080 12679732 ~ 12680028 (+)
XLOC_003703 LO017916.1 non-coding upstream 488621 42625371 ~ 42625487 (+)
XLOC_003717 NA non-coding downstream 416333 43532582 ~ 43535890 (+)
XLOC_003718 CABZ01073015.1 non-coding downstream 526909 43643158 ~ 43646674 (+)
XLOC_003722 NA non-coding downstream 695380 43811629 ~ 43817356 (+)
XLOC_003723 NA non-coding downstream 705306 43821555 ~ 43822853 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_01201604_01202608 FOXG1B coding CI01000306 null 1200682 ~ 1204073 (-)