XLOC_003718 (CABZ01073015.1)


Basic Information

Item Value
gene id XLOC_003718
gene name CABZ01073015.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43643158 ~ 43646674 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007194
TTGGCTTAGCCAGTAGTCAGAAAGACGAAAGGGTAAATATccttcctagctgggatgttCATGAAGTGATATGATTAAAAACTAAAGAATAGAACTTTTCAGTTATATGTAGATTATTGTGCATTTGAAATTcgattatataaattaatatttccaCAATTGTTTGTATGATGCTCACTTTGTAAAAGCGTGGACTGTGTGACGATGCCTTTTACAATGCTGATAAAACCAGACATCAGTTATAAAAGCTGAACATctctttaatgtgtgtgtgtgtgtgtgtgtttcagcgtGGTCAGGTGCGGCGGCGGTATGAGTCTCCAGGTGTGTGTTCAGATGATGATGTGAACAGTGATGCGTCGAGTGTGTGCTCTGAGCGATCCTTCAGTTCTCGTAACGGGAGTGCGGCCCCACATCACCTGCGCCAGACAGAGGACGTGGCGGAAATCCTGAACCGCTGCGCCAGCGCTAACTGCACTGAGAGGAAAGAGGGACTGATGAGCCTTCAGAACCTGCTGAAGAACCAGAGAGTGCTcagTCGTGTGGAGCTGAAGCGCCTGTGTGAAATCTTCACCAGGATGTTTGCTGATCCACACAGCAAGgtgttcAGCATGTTTCTGGAGACTCTGCTGGACTTCATCTCTCTGCACAGAGAGGATCTGCAG
>TCONS_00007193
TTGGCTTAGCCAGTAGTCAGAAAGACGAAAGGGTAAATATccttcctagctgggatgttCATGAAGTGATATGATTAAAAACTAAAGAATAGAACTTTTCAGTTATATGTAGATTATTGTGCATTTGAAATTcgattatataaattaatatttccaCAATTGTTTGTATGATGCTCACTTTGTAAAAGCGTGGACTGTGTGACGATGCCTTTTACAATGCTGATAAAACCAGACATCAGTTATAAAAGCTGAACATctctttaatgtgtgtgtgtgtgtgtgtgtttcagcgtGGTCAGGTGCGGCGGCGGTATGAGTCTCCAGGTGTGTGTTCAGATGATGATGTGAACAGTGATGCGTCGAGTGTGTGCTCTGAGCGATCCTTCAGTTCTCGTAACGGGAGTGCGGCCCCACATCACCTGCGCCAGACAGAGGACGTGGCGGAAATCCTGAACCGCTGCGCCAGCGCTAACTGCACTGAGAGGAAAGAGGGACTGATGAGCCTTCAGAACCTGCTGAAGAACCAGAGAGTGCTcagTCGTGTGGAGCTGAAGCGCCTGTGTGAAATCTTCACCAGGATGTTTGCTGATCCACACAGCAAGGTGACTTTGATCTGAACACATTCATACAGTCACATGACTTCTGATAGATCTGATGATTAATAAACATTCATGCTTTACTGTTCCACGCTCTGCTGATTGGCCGATTGATCAGAGAGTaagtctttactttcactttgaaTACAATGAGTGTGTGagcttgtgtgcatgtgtgtttgtgcacatatATGTCTGTGCATTTGTttctgtatgtgtatataaaatgtgtcagtgtgtgtataaactgttttgtgtgtgtgtgtgtgtgtgcaggtgttcAGCATGTTTCTGGAGACTCTGCTGGACTTCATCTCTCTGCACAGAGAGGATCTGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007194 False 665 lncRNA 0.46 3 43643158 43646674
TCONS_00007193 True 935 lncRNA 0.44 2 43643158 43646674

Neighbor

gene id symbol gene type direction distance location
XLOC_003717 NA coding upstream 107268 43532582 ~ 43535890 (+)
XLOC_003716 slc29a1b coding upstream 184546 43419809 ~ 43458612 (+)
XLOC_003715 vipb coding upstream 228986 43401201 ~ 43414172 (+)
XLOC_003714 sult6b1 coding upstream 255095 43375326 ~ 43388063 (+)
XLOC_003713 CU929458.1 coding upstream 274776 43363075 ~ 43368382 (+)
XLOC_003719 gli2b coding downstream 15061 43661735 ~ 43713750 (+)
XLOC_003720 ralbb coding downstream 94275 43740949 ~ 43743702 (+)
XLOC_003721 zgc:153431 coding downstream 104589 43751263 ~ 43787153 (+)
XLOC_003722 NA coding downstream 164955 43811629 ~ 43817356 (+)
XLOC_003723 NA coding downstream 174881 43821555 ~ 43822853 (+)
XLOC_003369 CR854846.2 misc upstream 27520076 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 30931162 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 30948895 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 30957559 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 30963130 12679732 ~ 12680028 (+)
XLOC_003712 CABZ01058277.1 non-coding upstream 345525 43295275 ~ 43297633 (+)
XLOC_003710 CABZ01080006.1 non-coding upstream 565817 43070883 ~ 43077341 (+)
XLOC_003708 NA non-coding upstream 595137 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 non-coding upstream 598209 43044826 ~ 43044949 (+)
XLOC_003724 NA non-coding downstream 297208 43943882 ~ 43950660 (+)
XLOC_003725 FP016005.2 non-coding downstream 378088 44024762 ~ 44024878 (+)
XLOC_003727 NA non-coding downstream 516656 44163330 ~ 44196871 (+)

Expression


Co-expression Network