RNA id: TCONS_00007194



Basic Information


Item Value
RNA id TCONS_00007194
length 665
lncRNA type lincRNA
GC content 0.46
exon number 3
gene id XLOC_003718
representative False

Chromosome Information


Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43643158 ~ 43646674 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTGGCTTAGCCAGTAGTCAGAAAGACGAAAGGGTAAATATccttcctagctgggatgttCATGAAGTGATATGATTAAAAACTAAAGAATAGAACTTTTCAGTTATATGTAGATTATTGTGCATTTGAAATTcgattatataaattaatatttccaCAATTGTTTGTATGATGCTCACTTTGTAAAAGCGTGGACTGTGTGACGATGCCTTTTACAATGCTGATAAAACCAGACATCAGTTATAAAAGCTGAACATctctttaatgtgtgtgtgtgtgtgtgtgtttcagcgtGGTCAGGTGCGGCGGCGGTATGAGTCTCCAGGTGTGTGTTCAGATGATGATGTGAACAGTGATGCGTCGAGTGTGTGCTCTGAGCGATCCTTCAGTTCTCGTAACGGGAGTGCGGCCCCACATCACCTGCGCCAGACAGAGGACGTGGCGGAAATCCTGAACCGCTGCGCCAGCGCTAACTGCACTGAGAGGAAAGAGGGACTGATGAGCCTTCAGAACCTGCTGAAGAACCAGAGAGTGCTcagTCGTGTGGAGCTGAAGCGCCTGTGTGAAATCTTCACCAGGATGTTTGCTGATCCACACAGCAAGgtgttcAGCATGTTTCTGGAGACTCTGCTGGACTTCATCTCTCTGCACAGAGAGGATCTGCAG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194943

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00008692 lncRNA upstream 107268 43532582 ~ 43535890 (+) True XLOC_003717
TCONS_00007185 lncRNA upstream 345525 43295275 ~ 43297633 (+) True XLOC_003712
TCONS_00007183 lncRNA upstream 565817 43070883 ~ 43077341 (+) True XLOC_003710
TCONS_00008691 lncRNA upstream 597519 43035558 ~ 43045639 (+) False XLOC_003708
TCONS_00008690 lncRNA upstream 798210 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00008693 lncRNA downstream 164955 43811629 ~ 43817356 (+) False XLOC_003722
TCONS_00008694 lncRNA downstream 166719 43813393 ~ 43817356 (+) False XLOC_003722
TCONS_00008695 lncRNA downstream 167032 43813706 ~ 43817356 (+) True XLOC_003722
TCONS_00008696 lncRNA downstream 174881 43821555 ~ 43822853 (+) True XLOC_003723
TCONS_00008697 lncRNA downstream 297208 43943882 ~ 43950660 (+) True XLOC_003724
TCONS_00007191 mRNA upstream 184546 43419809 ~ 43458612 (+) False XLOC_003716
TCONS_00007192 mRNA upstream 187576 43431289 ~ 43455582 (+) True XLOC_003716
TCONS_00007188 mRNA upstream 228986 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007190 mRNA upstream 228986 43403525 ~ 43414172 (+) True XLOC_003715
TCONS_00007189 mRNA upstream 229000 43401592 ~ 43414158 (+) False XLOC_003715
TCONS_00007195 mRNA downstream 15061 43661735 ~ 43713750 (+) True XLOC_003719
TCONS_00007196 mRNA downstream 94275 43740949 ~ 43743702 (+) True XLOC_003720
TCONS_00007197 mRNA downstream 104589 43751263 ~ 43787153 (+) True XLOC_003721
TCONS_00007199 mRNA downstream 488677 44135351 ~ 44138271 (+) True XLOC_003726
TCONS_00007200 mRNA downstream 579526 44226200 ~ 44447359 (+) False XLOC_003728
TCONS_00007182 other upstream 598209 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 1017671 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 2177922 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 2485230 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007198 other downstream 378088 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 678087 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 678087 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 682100 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 688992 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile


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