RNA id: TCONS_00008690


Basic Information

Item Value
RNA id TCONS_00008690
length 786
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id XLOC_003707
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42839850 ~ 42883298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCAAACTCCATGCTGAGACGGTGGTTGATGCTCTAGTTTCTGTTGACAACAtcaatgaattgtgtggaacccggcATTTTTCTTCACAGTCAAGTTCAGTTCTTCATCTAAATCGCAATCTCTCCACCGCCATGAAAGAGGACCATCAGCAGCCAGAGCCCGTGTTTCTCAGCTCTGGAACCCGATCAGAAAGGAATGTTTTCTGGCCTCTTTCTCCATCATTCTGCAGCTCCGGTCAGCCTGTCACCCGAGCCCTGTGATATACTGTAGGCTCCTCCGTCCTTTATGTGCCGTTCTCCGGGGACGGCCCACACAGAGGAGCATTGTAGGACGGCAGACACAATGGGATTTACATGAGGAATGTTGACCAGAGCCACCAAAAACCAGTCCGGCCACCTGCAACAAAGACCTGGATTAAAAACGGCATTTGCAGAATCTGAGGTGTGTTGAAGCATTTACAATTAATGATGTGAGGATTTCATCTCTGAAATATGCTGCTGTGTTATTGTAACCCAACACTTACTAATGACACGTTGATGGAAATGATGTGCTTTCTGCTTACACTTGCTTTAAGACTTTCAGGATAAGGTTTCATAAATCACTTGTCGCGCTTCTAATaattagttttaacagcagagaaatgtgtttgtgtgtaaactgTGATGATGATTTGTGGTTGAGTCAAAGTCCctataaggcaagtcatttcacttggcggccatctttgaaacatctCTCTTGTGCATTCTGTTTGAGTGGGGAAACATTCAATTCTCCATAACTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008429 lncRNA upstream 41115 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00007166 lncRNA upstream 266884 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00007156 lncRNA upstream 421492 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00008428 lncRNA upstream 707959 42127415 ~ 42131907 (+) True XLOC_003692
TCONS_00008427 lncRNA upstream 741575 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008691 lncRNA downstream 190610 43035558 ~ 43045639 (+) False XLOC_003708
TCONS_00007183 lncRNA downstream 225935 43070883 ~ 43077341 (+) True XLOC_003710
TCONS_00007185 lncRNA downstream 450327 43295275 ~ 43297633 (+) True XLOC_003712
TCONS_00008692 lncRNA downstream 687634 43532582 ~ 43535890 (+) True XLOC_003717
TCONS_00007194 lncRNA downstream 798210 43643158 ~ 43646674 (+) False XLOC_003718
TCONS_00007176 mRNA upstream 20136 42726712 ~ 42819730 (+) False XLOC_003705
TCONS_00007179 mRNA upstream 20136 42766097 ~ 42819730 (+) False XLOC_003705
TCONS_00007178 mRNA upstream 24468 42765963 ~ 42815398 (+) False XLOC_003705
TCONS_00007177 mRNA upstream 107426 42730639 ~ 42732440 (+) True XLOC_003706
TCONS_00007175 mRNA upstream 120507 42641469 ~ 42719359 (+) True XLOC_003704
TCONS_00007181 mRNA downstream 198223 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007184 mRNA downstream 269160 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007186 mRNA downstream 518127 43363075 ~ 43368382 (+) True XLOC_003713
TCONS_00007187 mRNA downstream 530378 43375326 ~ 43388063 (+) True XLOC_003714
TCONS_00007188 mRNA downstream 556253 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007172 other upstream 214379 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1374630 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 1681938 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 1681940 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1950572 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007182 other downstream 199878 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1179814 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 1479813 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 1479813 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 1483826 44328774 ~ 44335322 (+) True XLOC_003732