RNA id: TCONS_00007187


Basic Information

Item Value
RNA id TCONS_00007187
length 1538
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_003714
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43375326 ~ 43388063 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCTCACGCGAGCCTGTGAAAGAGGGCGGATCTACAACACACTCCTTCCTCAACTACAGCATAAAtactcagtgtgtgtgtttgttcttgcGAGTGTTCTTCTGCAAATCTGAACACACAGAACTACAATCAACCAGCCAGCATGAGCCAAATGAAGTCCAGAATGGAGACAGCGGCGAAGATGAAGGATGAAGACAAGCTCTACAGGCGGGACGGGATCCTGTACTCGACTGTTCTCAGTCCACCAGAGACCCTGGACAAGTTAAAAGACCTGCAGGCCAGAGAGGATGATCTCATTCTGGTTGCGTATCCTAAATGTGGGTTTAACTGGATGGTGGCGGTCCTGCGTAAAATCATTAACGCTTCCACTGGTAAAGATGAGAAGCCTCCTGAAAGGCCTCCTCTGGTCGAGTTTCTACCTCCAACTGTTCAAGAGGAAATGGCACAAATGCCTCCACCGAGGCTTCTGGGAACTCATCTACACCCTGACAACATGCCTGCTACTTTCTTTACTAAGAAACCAAAGATTCTTGTGGTGTTCAGAAACCCGAAAGACACAGTGGTCTcatattaccatttcatgaacaAAAACCCAGTTCTGCCCAACGCTGAGTCCTGGGACAAGTTCTTCTCTGACTTCATGACTGGTGATGTTAGTTGGGGCTCTTACTTTGATCACGCTCTCGCCTGGGAGAAACGGATAGACGACCCGAACGTGATGATCGTGATGTATGAGGATCTCAAACAGAATCTTCCAGAAGGAGTGAAGAAGATCTCGGAGTTCTTCAGTCTTCCTCTGACAGATGAGCAGGTCAGCAGCATTGCTGGACAGAGCACCTTCAGCGCTATGGTGGAGAACTCGCAGAAATCCCACGGCAACTTTGGcagcatttttttcagaaaagGCGAGGTGGGCGACTGGAAGAATCATTTCTCTGAGGCTCAGAGTAAACAGATGGATGAGCTCTACCACAGCAAACTAGCTGGAACTAAACTGGCTGCCCGAATGAATTATGACCTTTACTGCCAATAAACCTGAAGACACGACATGAGCTGACAGACGAAGACAATGTTTTACAGGAATTCACCAGGGCAGCTGTTCATGAACGTCTTTGATACTCTTCATGTACATTCCATTGCTTACAATAAGCACAGACTCACTGTCATTAAACCTCATGGTGTGTGTTTgctaacatttattaaaatgaaatgtcaACACTATTTAGGTCTCTGTTATCAATTGCAAATATTCACCACTAGTCTGCGCACTAGTCACTACCAAAATCCACAGGAAGTGAGCCGAATGATGGAATTGGATCTAATGGCTTATGGACAGCTGGGGAAATGATGCTAAATGTCCATAATGAATTGCAATTGCATATAATGATGTAGAGTTAAGACAGCTAAATAAACATCATCAGCATTTTTACAAGAGAGTAAAACAAAGTCCAGTCAACCTTATTCATCTGGCACCCAGTAGAAACTCATCAAAACAGATGAATGTACACGTGTGAATAAAAAATTAGCACAAGTACAC

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0005575 cellular_component cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-228 Enables sulfotransferase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be active in cytoplasm. Is expressed in several structures, including EVL; digestive system; ectoderm; forerunner cell group; and tail bud. Orthologous to human SULT6B1 (sulfotransferase family 6B member 1).

Ensembl:

ensembl_id ENSDART00000130131

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007185 lncRNA upstream 77693 43295275 ~ 43297633 (+) True XLOC_003712
TCONS_00007183 lncRNA upstream 297985 43070883 ~ 43077341 (+) True XLOC_003710
TCONS_00008691 lncRNA upstream 329687 43035558 ~ 43045639 (+) False XLOC_003708
TCONS_00008690 lncRNA upstream 530378 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00008692 lncRNA downstream 144519 43532582 ~ 43535890 (+) True XLOC_003717
TCONS_00007194 lncRNA downstream 255095 43643158 ~ 43646674 (+) False XLOC_003718
TCONS_00007193 lncRNA downstream 255095 43643158 ~ 43646674 (+) True XLOC_003718
TCONS_00008693 lncRNA downstream 423566 43811629 ~ 43817356 (+) False XLOC_003722
TCONS_00008694 lncRNA downstream 425330 43813393 ~ 43817356 (+) False XLOC_003722
TCONS_00007186 mRNA upstream 6944 43363075 ~ 43368382 (+) True XLOC_003713
TCONS_00007184 mRNA upstream 259077 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007181 mRNA upstream 327305 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007179 mRNA upstream 555596 42766097 ~ 42819730 (+) False XLOC_003705
TCONS_00007178 mRNA upstream 559928 42765963 ~ 42815398 (+) False XLOC_003705
TCONS_00007188 mRNA downstream 13138 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007189 mRNA downstream 13529 43401592 ~ 43414158 (+) False XLOC_003715
TCONS_00007190 mRNA downstream 15462 43403525 ~ 43414172 (+) True XLOC_003715
TCONS_00007191 mRNA downstream 31746 43419809 ~ 43458612 (+) False XLOC_003716
TCONS_00007192 mRNA downstream 43226 43431289 ~ 43455582 (+) True XLOC_003716
TCONS_00007182 other upstream 330377 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 749839 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1910090 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 2217398 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007198 other downstream 636699 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 936698 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 936698 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 940711 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 947603 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_01120958_01127237.mRNA True 1374 mRNA 0.47 7 CI01000306 1120816 ~ 1127560 (-)