RNA id: TCONS_00007186


Basic Information

Item Value
RNA id TCONS_00007186
length 5308
RNA type mRNA
GC content 0.47
exon number 1
gene id XLOC_003713
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43363075 ~ 43368382 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaataattttaatactattattatttgcagttattttcaatatattccatatatatatatatatatatatatgttgtaaatgagggcgatgccaaccctcttgtgcaccaccagagggaaccatcgccagaattctgattcgactcacggactcaaaatcccataagccctgctacctggcactgattacggtccaggtgcaactcatcagctctcgtgtatatataccacactcacgctccggttcgttgcgaagtcttgatttgcctggctgtcatttctgagcgttccatactccctgcttcggactgatctttgtttctgaccctgtgcttgttctacgattacgaaagacatctgcctgcccctgatctccagcctgttattctgaccagtaagatatctgcctgcctttgaacttttgcctgtcccacgttctgtctcctggattgcccctttgtgtttgtttgtatgtgtgctcttaataaagcttgcaaatggattcaatgccttctgactcatcacaacagaagacttcgccactacagaatccagcagctttagcacaagtctcgactgaactttccgctcaagccactcagttagccacccatcatcaacaactcacccatctaacttctctcacggaggaactggtgagagctatgcagcaactccgtcatccgaatcctgcagttaccccgcctgctaccatgacagcttctcaaccaacgcatgtctccaatgctccggctaccgtaagtccccgattagcttttcctgaaaagtttgatgggtcaccttctcgctgcaaaggcttcttattacaatgcaaactatttgttaaccaacaacctgcattatatcccactgattctagtcgggtggcttttgtatgcaacctgttaacggggaaagcgctggaatgggctacagcgatatggaaggaggaggaatgtaactatcccacatttgaaacttttctcaagcaatttcgggaagtgttcgagcacccagcagatgggagaagccccggtgagcagttactttctcttacacaggggcgtaacacagctgcagaatacgccttttcatttcgcactctcgccgctcaaactaactgggttgaggatacactgaagacactattcagacggggtctgaataccaatctacaatctgaattggcttgccgtgacgaaggaaagaaattgaacgaactcattgaacttaccatccgtcttgatcatctgattcgcagccgtagaaatcctcgcacacagctccatgtttcaagtgacacgccccctgatgaacccatgcaactgggtttcacccgtctcacccatgaagaaagaatgcatcgattgcaaaatcatctatgcctgtactgcggtcaatcagggcacaggaaatccacctgcagcgtgcgacctcagacaccagttcaattggtgagtccttcccatgttcctgcacttttcagtgtactgattcctgtgattattaaatttgataaaagaatgattaatactacggctcttgtcgactctggatctgccggaaactttatatctaagaaatttgctttatgtcacgaactatctctcagctcatatgattcctgtcttgcagtggaagcactagacggtcgtcctgtgggtgaaggacgcatccgtatgattacgaataagctacagttacaagttggtgttctacacattgaagaaatgcaattctacattattgattcagttaatcatccactggtgttgggactgccctggttaaggcgacatgatcctcatatctcctggagggacggacagatattgcagtggagtgagtcatgcatgaaacagtgcatccagcccattcacaaaattccattacgaaccaccaatgtgttacctgaactcgttgatgaactaatccccattgagtaccatgacttacatgaagcttttagcaaacaaaaagctactcaacttcccccacatcgaccaagtgattgtgctattgagttaattccaggttcaagtcctccaacgggtcgaatattccctctgtcacaacctgagcacaaggcaatgtctgaatatatcgacgaagaattggccaagggtttcatccgaccttctacatctcctgcttcagctggattcttctttgtaaagaagaaagatggcagtttacgtccctgtattgattaccgagggctcaatgaaatcaccgtaaaattccgctatccattacccctcgtacctcctgccctggaacaattaagaaaggctagatattataccaagcttgatcttcgcagtgcatataaccttgtcagaatccgtgctggtgacgagtggaagaccgcgttttccaccactagggggcactatgagtacacggtaatgcccttcggcctgtcaaactgtccatccgtgttccaatcttttatgaacgatgtctttcgggatatgctggatcgctgggtcatcatttacatcgacgacatcctcatatattcaaacacgatgaaggaacatgttgaacatgtacgtatagtgttgcaacgcatgattcaacatcgtctgtacgccaaattagagaagtgtgaatttcaccagacacagatcgcctttttgggatacgtcatcagtgcagaagggattaccatggatgatacgaaggtacaggcagttcaacgatggccgttaccccagaatctcaaggagttgcagcgatttctaggttttgccaacttctatagacggtttatcagaggctttagttcaatagccgcaccattaacagccatgaccaaacgaaattcccacaaactatcctggtcctctgaagcacgccaagcattttgcgatctgaagactcaattcaccacagctcccattctccgtcatcccaacccagacctacctttcattgtggaagtggatgcatccaacacaggagtcggtgctgtgttatctcaacgtcagggtcaaccatccaaaatgtatccatgtgccttcttctcccgtaaattgaccagcgcagaacgaaactatgatgtgggaaatcgcgaattactggcaatgaaattagccctggaagaatggagacactggctggagggggctagtcagcaattcaccatattaactgaccacaagaatctggaatatcttcgctcagccaaacgtctaaatcccagacaagctcgttgggctttgttcttcaccagattcgacttcattgtcacctatagaccagggagtaaaaatagtaaggcagatgcactatccaggctatcagaggataaaaccccaattagtgatgaaaccattattcctacgaacttactagtggctccagtacagtgggacatacttaccgagatccaagaggccaaccgagaaaacaaccctccagtagactgtccgaatcacctgatttttgtacccaataacatacgtaccagattactgacccatattcatgacactcccagttcggggcatccaggcatcactgcaactttggagttagtcaaagcccgtttctggtggccgtccctcacgaaggatgtaattaattatgttcagaaatgtgaaatttgccaaagcacgaaggcatctcaccaaacccctgctggcctgttacaaccgctaccggttccgcaacggccctggtcccatatagcggtggacttcattacggatctccctgtttcccagaacaacacagtcattctcacggtggttgatcgtttctccaaggcttgtcgcctaataccgttgcccaaattgccctctgcctttgaaaccgcagaagccctgtgcaatcatgtatttcgaatgtttggcttacctgatgatatcgtctcagacaggggatcccaattcacttcccgggtatggtccgctctctgtaaaaatctaaatattaatgttagtctcacctcagggtaccatcctcaatccaacggccaaactgaacgtatgaatcaagaagtcattcgatttctacgttcctactgtcatcagcaacagcacgactggagtcgctatctgatgtgggcagaatatgcacaaaattcattaataaagccagccacgggtatcacgccattcaaatgtattcttggctaccaaccacccctgtttccatggtccggagaacccactgagttacctgctgtcacggattggctgcagcggagtgaggatgtctggaaccaggctcacagacatctcatgagggcagtcaggaggagagagattcaggcgaaccgtcaccgacgccagggacccacgtatcaaccggggcagtgggtgtggttgtcgacacgagaccttcgtctgagattgccctgccgcaaactcagtcccaggtatgtagggccattcaaaattgtacgccagattactccagtgtcttttcgcttagccttgcctaatcattatcgtatttctcctactttccacatgtcattactcaaacccgctggtggtccacgagaggaggcggttgaggaggaatcggaaaccaggacccctccacctgtcatgatcgagggcgaggaagcttacctcgttcgagaagtgctggactctcgacgtcggggtagcgccctccaatatctggtggactgggaagggtacggtccagaggaacggtcctgggtgaatgctagagatattctagacccaactctcacggaagagtttcatcaaaggttcccagagaaaccagccccccgacagcgcggtagaccccggcgtcaggtgccttctcgcttcaggagccgctcgcaggaggggggttctgttgtaaatgagggcgatgccaaccctcttgtgcaccaccagagggaaccatcgccagaattctgattcgactcacggactcaaaatcccataagccctgctacctggcactgattacggtccaggtgcaactcatcagctctcgtgtatatataccacactcacgctccggttcgttgcgaagtcttgatttgcctggctgtcatttctgagcgttccatactccctgcttcggactgatctttgtttctgaccctgtgcttgttctacgattacgaaagacatctgcctgcccctgatctccagcctgttattctgaccagtaagatatctgcctgcctttgaacttttgcctgtcccacgttctgtctcctggattgcccctttgtgtttgtttgtatgtgtgctcttaataaagcttgcaaatggattcaatgccttctgactcatcacaacaatatatatatatgtatatataattttat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179934

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007185 lncRNA upstream 65442 43295275 ~ 43297633 (+) True XLOC_003712
TCONS_00007183 lncRNA upstream 285734 43070883 ~ 43077341 (+) True XLOC_003710
TCONS_00008691 lncRNA upstream 317436 43035558 ~ 43045639 (+) False XLOC_003708
TCONS_00008690 lncRNA upstream 518127 42839866 ~ 42844948 (+) False XLOC_003707
TCONS_00008689 lncRNA upstream 521567 42839856 ~ 42841508 (+) False XLOC_003707
TCONS_00008692 lncRNA downstream 164200 43532582 ~ 43535890 (+) True XLOC_003717
TCONS_00007194 lncRNA downstream 274776 43643158 ~ 43646674 (+) False XLOC_003718
TCONS_00007193 lncRNA downstream 274776 43643158 ~ 43646674 (+) True XLOC_003718
TCONS_00008693 lncRNA downstream 443247 43811629 ~ 43817356 (+) False XLOC_003722
TCONS_00008694 lncRNA downstream 445011 43813393 ~ 43817356 (+) False XLOC_003722
TCONS_00007184 mRNA upstream 246826 43114108 ~ 43116249 (+) True XLOC_003711
TCONS_00007181 mRNA upstream 315054 43043171 ~ 43048021 (+) True XLOC_003708
TCONS_00007176 mRNA upstream 543345 42726712 ~ 42819730 (+) False XLOC_003705
TCONS_00007187 mRNA downstream 6944 43375326 ~ 43388063 (+) True XLOC_003714
TCONS_00007188 mRNA downstream 32819 43401201 ~ 43414172 (+) False XLOC_003715
TCONS_00007189 mRNA downstream 33210 43401592 ~ 43414158 (+) False XLOC_003715
TCONS_00007190 mRNA downstream 35143 43403525 ~ 43414172 (+) True XLOC_003715
TCONS_00007191 mRNA downstream 51427 43419809 ~ 43458612 (+) False XLOC_003716
TCONS_00007182 other upstream 318126 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 737588 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 1897839 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 2205147 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007198 other downstream 656380 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 956379 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 956379 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 960392 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 967284 44335666 ~ 44335780 (+) True XLOC_003733

Expression Profile

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