RNA id: TCONS_00008696


Basic Information

Item Value
RNA id TCONS_00008696
length 446
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_003723
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43821555 ~ 43822853 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcacagattctgtctggccctggttGTAAgccatcattttttacagtgcacactgACTTCAAGTGTACATGTCATGCAAAGGCATCAGAAGAGTGAATAGTGTTgaggcagcagcagcagctcctgTTTGTTTGCCCGTCGATCGTGCTGCTCATTCTCAGTCCGCATGATTGGACTGAAGTGATCCTGGATCTCGTCTCATTAGAGCAGCAGCTCACGGGGTCAAAGGTCGCCTCAATAACTGCAGCACAAATCAAGCTGGCCGCCTCAGACTTCAGTGCTCTGATTCACAAAAACATCCACTGATTCTCCTGCTGATCCAGAACAGGACTTTTTAACCTAATGTTGGGTCAATTATGGACAAGCCCATTCTTTGGCTTACAGTGTTgcttaaattgaattgaaaacacAATATTGGGTTAAATATAGACAAAACTCAAATGTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008693 lncRNA upstream 4199 43811629 ~ 43817356 (+) False XLOC_003722
TCONS_00008694 lncRNA upstream 4199 43813393 ~ 43817356 (+) False XLOC_003722
TCONS_00008695 lncRNA upstream 4199 43813706 ~ 43817356 (+) True XLOC_003722
TCONS_00007194 lncRNA upstream 174881 43643158 ~ 43646674 (+) False XLOC_003718
TCONS_00007193 lncRNA upstream 174881 43643158 ~ 43646674 (+) True XLOC_003718
TCONS_00008697 lncRNA downstream 121029 43943882 ~ 43950660 (+) True XLOC_003724
TCONS_00008698 lncRNA downstream 340477 44163330 ~ 44196871 (+) True XLOC_003727
TCONS_00008430 lncRNA downstream 403347 44226200 ~ 44238527 (+) False XLOC_003728
TCONS_00008699 lncRNA downstream 479132 44301985 ~ 44303041 (+) True XLOC_003729
TCONS_00008700 lncRNA downstream 488481 44311334 ~ 44314410 (+) True XLOC_003730
TCONS_00007197 mRNA upstream 34402 43751263 ~ 43787153 (+) True XLOC_003721
TCONS_00007196 mRNA upstream 77853 43740949 ~ 43743702 (+) True XLOC_003720
TCONS_00007195 mRNA upstream 107805 43661735 ~ 43713750 (+) True XLOC_003719
TCONS_00007191 mRNA upstream 362943 43419809 ~ 43458612 (+) False XLOC_003716
TCONS_00007199 mRNA downstream 312498 44135351 ~ 44138271 (+) True XLOC_003726
TCONS_00007200 mRNA downstream 403347 44226200 ~ 44447359 (+) False XLOC_003728
TCONS_00007201 mRNA downstream 413330 44236183 ~ 44442536 (+) True XLOC_003728
TCONS_00007202 mRNA downstream 477695 44300548 ~ 44309032 (+) False XLOC_003729
TCONS_00007207 mRNA downstream 533651 44356504 ~ 44363031 (+) False XLOC_003734
TCONS_00007182 other upstream 776606 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 1196068 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 2356319 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 2663627 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007198 other downstream 201909 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 501908 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 501908 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 505921 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 512813 44335666 ~ 44335780 (+) True XLOC_003733