RNA id: TCONS_00007202


Basic Information

Item Value
RNA id TCONS_00007202
length 657
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_003729
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44300548 ~ 44309032 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGTGAGACGGAGAGTCACAGGAAGTCAAAGCAGACAGAGTTCATGACATTAATAAAGCAGTGTTCACACGTCGTCTTTAATGTGGCTGAAAGATGCTGTATCAGCTCAGAGACACACAGAATCGCTCCGTCTCCTGTGGTCCATGTTCGGGGTCTCTGTGAGTCTGTGGTGGAGGCTGATCTGGTGGAGTCCTTGGAGAAGTTCGGAAACATCTGTTATGTGATGATGATGCCATTCAAGCGTCAGGCGCTGGTGGAGTTTGAGGAGGTGGAGAGCGCAGACCGCTGTGTGTCGTGTGGATCTCAGGAGGCCGTCTACATCGCCGGTCAGCAGGCCTACTTCAACTACTCCACCAGCAAACGCATCACGAGGCCCACCAACGCAGACGACCCCAACAGCGGGAACAAAGTGCTGCTGCTGTCCATCCAGAACCCGCTCTACCCCATCACTACGGATGTGGTGTACACTGTCTGTAACGCGATCGGGAATATGCTGTGCATCGTTATCTACAAGAGGAACTGCATTCAGGCCATGAGAGAATATCAAACAGAGAGTGTGGGCCtTACCATCCCGAACGCCCAGAAAAACGACAACGACAGCTGGGACTACACCAAACCCTTCCTGACATGTTGGCTGCTGATAAGAGTTTCCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000191626

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008430 lncRNA upstream 62021 44226200 ~ 44238527 (+) False XLOC_003728
TCONS_00008698 lncRNA upstream 103677 44163330 ~ 44196871 (+) True XLOC_003727
TCONS_00008697 lncRNA upstream 349888 43943882 ~ 43950660 (+) True XLOC_003724
TCONS_00008696 lncRNA upstream 477695 43821555 ~ 43822853 (+) True XLOC_003723
TCONS_00008694 lncRNA upstream 483192 43813393 ~ 43817356 (+) False XLOC_003722
TCONS_00008700 lncRNA downstream 2302 44311334 ~ 44314410 (+) True XLOC_003730
TCONS_00008701 lncRNA downstream 8171 44317203 ~ 44318134 (+) False XLOC_003731
TCONS_00008702 lncRNA downstream 8176 44317208 ~ 44318134 (+) True XLOC_003731
TCONS_00008432 lncRNA downstream 15729 44324761 ~ 44335322 (+) False XLOC_003732
TCONS_00008431 lncRNA downstream 15729 44324761 ~ 44335322 (+) False XLOC_003732
TCONS_00007199 mRNA upstream 162277 44135351 ~ 44138271 (+) True XLOC_003726
TCONS_00007197 mRNA upstream 513395 43751263 ~ 43787153 (+) True XLOC_003721
TCONS_00007196 mRNA upstream 556846 43740949 ~ 43743702 (+) True XLOC_003720
TCONS_00007195 mRNA upstream 586798 43661735 ~ 43713750 (+) True XLOC_003719
TCONS_00007192 mRNA upstream 844966 43431289 ~ 43455582 (+) True XLOC_003716
TCONS_00007207 mRNA downstream 47472 44356504 ~ 44363031 (+) False XLOC_003734
TCONS_00007208 mRNA downstream 47675 44356707 ~ 44363032 (+) True XLOC_003734
TCONS_00007209 mRNA downstream 193378 44502410 ~ 44515880 (+) False XLOC_003739
TCONS_00007210 mRNA downstream 194742 44503774 ~ 44524932 (+) True XLOC_003739
TCONS_00007213 mRNA downstream 239177 44548209 ~ 44603789 (+) False XLOC_003741
TCONS_00007198 other upstream 275670 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007182 other upstream 1255599 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 1675061 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 2835312 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007139 other upstream 3142622 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007203 other downstream 15729 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 15729 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 19742 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 26634 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007223 other downstream 542442 44851474 ~ 44851593 (+) True XLOC_003747

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_01514599_01534002.mRNA True 2335 mRNA 0.54 18 CI01000306 1514355 ~ 1534002 (-)