RNA id: TCONS_00008430


Basic Information

Item Value
RNA id TCONS_00008430
length 925
lncRNA type sense_over
GC content 0.46
exon number 4
gene id XLOC_003728
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44226200 ~ 44447359 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTTTCTCCTACTGGCGCTTTGTTGAGGCAGCGGACGGACTGTACCATTCATCTGTGGGTGTACAACACAATCCCATCTACAACATTTATATCTGTATTCTCCCACAAAACACGTAATATAGCATTATAGCAGAGTTAAACACTGTATGGAGTAAATTAAATCACATATgtgattttaaatttaatttattgaaatTGGTTGATCAGCAGTGTTGTTGATTCACCCCTCCGCCGCGTCTGTTGCCATGTTCCCGGTTCCCTTATGGGTGTGGTGACGAGATTGCTTGTGAAAACTGACTCTCAGCTCGTGAGGGCTGCGTGGccctttaaatgtgtttaaaacggAGTTACGATTAATTCTGCTGCATTAAAATTTATTTCTGATCTCATCGTCATGCGAGGAATCTGAGAAGAGCCGAATTTACCCGAATCAGCCTGATCAGGTCCAGCACGTCGTCGTCTCAGGTGCAGGTCAAACAGGAACAATGAGTGAGTTGGAGCAGTTGCGTCAGGAAGCGGATCAGCTTCGCAATCAGATCCGGGATGCAAGAAAGGCCTGCAGTGACTCCACACTTTCGCAGATGACAGCGAGTCTGGACTCAGTGGGACGGATACAGATGCGGACGAGACGCACACTCAGAGGCCACCTCGCTAAAATATATGCCATGCACTGGGGCAGCGACTCCAGGTGTGTGTTTGAAGACTCATTCAGAGACCATCCCTGACTATCCGCACTGGCTTTAAAtgcagaaaccattgctttaaAGCCTCCTGTAAGCTGTGTGATTAATATTACATGAAATAACACTTGGGACCCCAGTGTTCATTATCCATGGAGCTGTAATAAGGCCTTTCTCACCATGTTACTCAAATCCCATCTGTGTCCCGTTTTAATTACTTCTCGTTGACTGAAAAAAAGCATG

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008698 lncRNA upstream 29329 44163330 ~ 44196871 (+) True XLOC_003727
TCONS_00008697 lncRNA upstream 275540 43943882 ~ 43950660 (+) True XLOC_003724
TCONS_00008696 lncRNA upstream 403347 43821555 ~ 43822853 (+) True XLOC_003723
TCONS_00008693 lncRNA upstream 408844 43811629 ~ 43817356 (+) False XLOC_003722
TCONS_00008699 lncRNA downstream 63458 44301985 ~ 44303041 (+) True XLOC_003729
TCONS_00008700 lncRNA downstream 72807 44311334 ~ 44314410 (+) True XLOC_003730
TCONS_00008701 lncRNA downstream 78676 44317203 ~ 44318134 (+) False XLOC_003731
TCONS_00008702 lncRNA downstream 78681 44317208 ~ 44318134 (+) True XLOC_003731
TCONS_00008432 lncRNA downstream 86234 44324761 ~ 44335322 (+) False XLOC_003732
TCONS_00007199 mRNA upstream 87929 44135351 ~ 44138271 (+) True XLOC_003726
TCONS_00007197 mRNA upstream 439047 43751263 ~ 43787153 (+) True XLOC_003721
TCONS_00007196 mRNA upstream 482498 43740949 ~ 43743702 (+) True XLOC_003720
TCONS_00007195 mRNA upstream 512450 43661735 ~ 43713750 (+) True XLOC_003719
TCONS_00007192 mRNA upstream 770618 43431289 ~ 43455582 (+) True XLOC_003716
TCONS_00007202 mRNA downstream 62021 44300548 ~ 44309032 (+) False XLOC_003729
TCONS_00007207 mRNA downstream 117977 44356504 ~ 44363031 (+) False XLOC_003734
TCONS_00007208 mRNA downstream 118180 44356707 ~ 44363032 (+) True XLOC_003734
TCONS_00007209 mRNA downstream 263883 44502410 ~ 44515880 (+) False XLOC_003739
TCONS_00007210 mRNA downstream 265247 44503774 ~ 44524932 (+) True XLOC_003739
TCONS_00007198 other upstream 201322 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007182 other upstream 1181251 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007172 other upstream 1600713 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007149 other upstream 2760964 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007139 other upstream 3068274 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007203 other downstream 86234 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 86234 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007205 other downstream 90247 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007206 other downstream 97139 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007223 other downstream 612947 44851474 ~ 44851593 (+) True XLOC_003747

Expression Profile

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