G1798604 (LOC107601366)


Basic Information

Item Value
gene id G1798604
gene name LOC107601366
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31298367 ~ 31299233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058276
caaaagaagtgcactatatagggaagtgTGCCATTTAGCATACACTCGCTAGCATTTTGAAAAACCCACCAGAGATATTAAATAGGAAACAGATGAAAGGAGAGAGCTGCTTATAATAAATAATAAgaaagggtggagagaaatgtgtgGTATAAACTAAACGGACTACCACTATAAAACGTACTGCGAGGAACTCTTTGAGGCGGTCCTCGATGCTGCCCTTGTGGATGGTGAATAAAGCTGCAGCGATCTGGTTTATGGCTTTAGCCAGACAGTGGATGTTGTTGCAGTGACCTTCAATAGCAGGGCTATACTGGGACATGACGTTGCTTGCCAAGGTGGGCATAGAGACCGCCACAAACACCATCAGCAGGCACGCTATCTTGTACTCCTCCTCAGGACTGATGTTCTCTGTTACCAAAGAAAGGAAATGTCTGTTAACAAACCATCACCATGACAGCTTAACAGCACGACTTTATCTTGGCATCATGACatagagaaaaatatatataaaaaaatagcaGTTTGGGGGAAATCGGGGAGATCCAATTTGGATATTATCTGAACACGAAGAC

Function

NR:

description
PREDICTED: nck-associated protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058276 True 575 lncRNA 0.43 2 31298367 31299233

Neighbor

gene id symbol gene type direction distance location
dnajc10 LOC106582260 coding upstream 31238 31249607 ~ 31267129 (+)
LOC110502091 LOC106582258 coding upstream 61004 31206388 ~ 31237363 (+)
LOC110501750 LOC106582256 coding upstream 110969 31089015 ~ 31187398 (+)
LOC110501749 LOC106582255 coding upstream 224077 31067493 ~ 31074290 (+)
LOC110501747 LOC106582251 coding upstream 258736 31037126 ~ 31039631 (+)
LOC110501756 LOC106586411 coding downstream 65309 31364542 ~ 31366811 (+)
pde1a LOC106582264 coding downstream 158778 31458011 ~ 31535521 (+)
neurod1 LOC106582267 coding downstream 336277 31635510 ~ 31638598 (+)
cerkl cerkl coding downstream 345187 31644420 ~ 31738039 (+)
cwc22 LOC106582271 coding downstream 794941 32094174 ~ 32144432 (+)
G1798600 LOC106586471 non-coding upstream 7160 31289995 ~ 31291207 (+)
G1798596 NA non-coding upstream 8701 31284091 ~ 31289666 (+)
G1798551 LOC100194703 non-coding upstream 106080 31191819 ~ 31192287 (+)
G1798550 NA non-coding upstream 107223 31190791 ~ 31191144 (+)
G1798549 NA non-coding upstream 107630 31190437 ~ 31190737 (+)
G1798615 NA non-coding downstream 13859 31313092 ~ 31315028 (+)
G1798661 NA non-coding downstream 78986 31378219 ~ 31415967 (+)
G1799506 NA non-coding downstream 204185 31503418 ~ 31552475 (+)
G1799624 NA non-coding downstream 273016 31572249 ~ 31572454 (+)
G1799630 NA non-coding downstream 283789 31583022 ~ 31583964 (+)
G1798597 NA other upstream 948 31293552 ~ 31297419 (+)
G1798579 NA other upstream 6162 31246481 ~ 31292205 (+)
G1798397 NA other upstream 407300 30888661 ~ 30891067 (+)
G1798168 NA other upstream 752413 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1372985 29917773 ~ 29933035 (+)
LOC110501767 LOC106582273 other downstream 1068403 32317123 ~ 32374208 (+)
G1800754 NA other downstream 1611560 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4441206 35740427 ~ 35760519 (+)
G1804873 NA other downstream 4575329 35874562 ~ 35875452 (+)
G1805191 NA other downstream 5064363 36363596 ~ 36363930 (+)

Expression


Co-expression Network