G1798600 (LOC106586471)


Basic Information

Item Value
gene id G1798600
gene name LOC106586471
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31289995 ~ 31291207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058271
CTGGATCTCTCCTCGTTCTCGTAACCCATGATGATGTACTCGTCGTTGGCagtgagaggaggacagggacAGCCAGAGTTGTAGTACAGTGTGACTGTATCACGAGGGATGTTCACTAAGGAAGACTTCAGGATGTCTTTGACCTCCACGATGGCACTCAGATCATGATTTCTGCTTCTAATCTCCTTCACCCTCGCACGAATCAATAGTTGTAATTACTCTTTAGGTAGGTCTTGAGACCCAGTCTTACCGACTTGCACTTGCATCGATCTGAAACAATAAAAGGATGTGATTCATTGTAGAACATCTGGTATTTGAACAGCAATATTACATTCTTGAAATAAATGTAATGACAAACACATCAAAATCTATATCGTATTCTAACATAATACTGTACAGAAAAGATTCTTCAGCACTAAATTCAATAGCCAAAGATTTGTAGACATACATTTCTAAGCACATTATGATACATTTTTAGTATGTTAGGACAAAAACAGCTCCATGCAAAAGTATTCAAATGTTTAGATAAAGCAaagaaaatgtgaatattattttACCATTGTTGGCTCCTTTACAGTTCACATTGTGAGAGTCACTTGGAAAGTCAGGAGTTGATTCTGAATAAAGATAACAATGATGAGAAAAATTTCACTGAAGAACAGTACAATCTATCACTTCACAAGTAGCCTCTAAAACAATAGGCAACTGTGGTTTAATTTTTTTGTCACTTTATATTGGGAACATATTCAAGGGTCACATGGATCTTACCAGGTGAGCATTTTGAGGGGTCTTGATAATAGGGGTTGTCTGAGGAAGAGAGGAATAATATTTACTTACAAGTGGCTGATGTAGAGAATTGTAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058271 True 862 lncRNA 0.37 2 31289995 31291207

Neighbor

gene id symbol gene type direction distance location
dnajc10 LOC106582260 coding upstream 22866 31249607 ~ 31267129 (+)
LOC110502091 LOC106582258 coding upstream 52632 31206388 ~ 31237363 (+)
LOC110501750 LOC106582256 coding upstream 102597 31089015 ~ 31187398 (+)
LOC110501749 LOC106582255 coding upstream 215705 31067493 ~ 31074290 (+)
LOC110501747 LOC106582251 coding upstream 250364 31037126 ~ 31039631 (+)
LOC110501756 LOC106586411 coding downstream 73335 31364542 ~ 31366811 (+)
pde1a LOC106582264 coding downstream 166804 31458011 ~ 31535521 (+)
neurod1 LOC106582267 coding downstream 344303 31635510 ~ 31638598 (+)
cerkl cerkl coding downstream 353213 31644420 ~ 31738039 (+)
cwc22 LOC106582271 coding downstream 802967 32094174 ~ 32144432 (+)
G1798596 NA non-coding upstream 329 31284091 ~ 31289666 (+)
G1798551 LOC100194703 non-coding upstream 97708 31191819 ~ 31192287 (+)
G1798550 NA non-coding upstream 98851 31190791 ~ 31191144 (+)
G1798549 NA non-coding upstream 99258 31190437 ~ 31190737 (+)
G1798487 NA non-coding upstream 116221 31173142 ~ 31173774 (+)
G1798604 LOC107601366 non-coding downstream 7160 31298367 ~ 31299233 (+)
G1798615 NA non-coding downstream 21885 31313092 ~ 31315028 (+)
G1798661 NA non-coding downstream 87012 31378219 ~ 31415967 (+)
G1799506 NA non-coding downstream 212211 31503418 ~ 31552475 (+)
G1799624 NA non-coding downstream 281042 31572249 ~ 31572454 (+)
G1798397 NA other upstream 398928 30888661 ~ 30891067 (+)
G1798168 NA other upstream 744041 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1364613 29917773 ~ 29933035 (+)
G1797582 NA other upstream 1545141 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 2279722 28997763 ~ 29010281 (+)
G1798597 NA other downstream 2345 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1076429 32317123 ~ 32374208 (+)
G1800754 NA other downstream 1619586 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4449232 35740427 ~ 35760519 (+)
G1804873 NA other downstream 4583355 35874562 ~ 35875452 (+)

Expression


Co-expression Network