G1798551 (LOC100194703)


Basic Information

Item Value
gene id G1798551
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31191819 ~ 31192287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2058218
cttgaggagtgaccacaagttctcaatgggattaaggtctggggagtttcctggccatggacccaaaatatcgatgttttgttccccgagctacttagttatcacttttgccttatggcaaggtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttcctgaatggttgggagaagttgctctcggaggatgtgttggtaccattctttattcatggctgtgttcttaggcaaaattgtgagtgagcccacacccttggctgagaagcaaccccacacatgaatggtgtcaggatgctttactgttggcatgacacaggactgatggtatcgctcaccttgtcttctccggacaagcttttttccggatgccccaaacaatcagaaagtggattcatcagagaaaatgacttttccCCAGTCCTCAGTAgaccaatccctgtaccttttgcagaatatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2058218 True 469 lncRNA 0.47 1 31191819 31192287

Neighbor

gene id symbol gene type direction distance location
LOC110501750 LOC106582256 coding upstream 4421 31089015 ~ 31187398 (+)
LOC110501749 LOC106582255 coding upstream 117529 31067493 ~ 31074290 (+)
LOC110501747 LOC106582251 coding upstream 152188 31037126 ~ 31039631 (+)
rl31 rl31 coding upstream 188176 30999685 ~ 31003643 (+)
LOC110502091 LOC106582258 coding downstream 14101 31206388 ~ 31237363 (+)
dnajc10 LOC106582260 coding downstream 57320 31249607 ~ 31267129 (+)
LOC110501756 LOC106586411 coding downstream 172255 31364542 ~ 31366811 (+)
pde1a LOC106582264 coding downstream 265724 31458011 ~ 31535521 (+)
neurod1 LOC106582267 coding downstream 443223 31635510 ~ 31638598 (+)
G1798550 NA non-coding upstream 675 31190791 ~ 31191144 (+)
G1798549 NA non-coding upstream 1082 31190437 ~ 31190737 (+)
G1798487 NA non-coding upstream 18045 31173142 ~ 31173774 (+)
G1798490 NA non-coding upstream 148846 31042748 ~ 31042973 (+)
G1798489 NA non-coding upstream 149134 31042478 ~ 31042685 (+)
G1798596 NA non-coding downstream 91804 31284091 ~ 31289666 (+)
G1798600 LOC106586471 non-coding downstream 97708 31289995 ~ 31291207 (+)
G1798604 LOC107601366 non-coding downstream 106080 31298367 ~ 31299233 (+)
G1798615 NA non-coding downstream 120805 31313092 ~ 31315028 (+)
G1798661 NA non-coding downstream 185932 31378219 ~ 31415967 (+)
G1798397 NA other upstream 300752 30888661 ~ 30891067 (+)
G1798168 NA other upstream 645865 30500656 ~ 30545954 (+)
LOC118943632 LOC100194703 other upstream 1266437 29917773 ~ 29933035 (+)
G1797582 NA other upstream 1446965 29744192 ~ 29744854 (+)
LOC110501700 LOC106582186 other upstream 2181546 28997763 ~ 29010281 (+)
G1798579 NA other downstream 54194 31246481 ~ 31292205 (+)
G1798597 NA other downstream 101265 31293552 ~ 31297419 (+)
LOC110501767 LOC106582273 other downstream 1175349 32317123 ~ 32374208 (+)
G1800754 NA other downstream 1718506 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 4548152 35740427 ~ 35760519 (+)

Expression


Co-expression Network