G1812805


Basic Information

Item Value
gene id G1812805
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43036738 ~ 43039716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2073872
AAAGGGACAAAATGTTTTGTTCTCCATAATTTTGCACATCATAATTTTGCCTTACATTCATACAAGATGAACACTAATACTGGTTTATCAAGAGGCAACGAAGCAAGCTCACACAATTTATATGCTGCACTGAGTCCATTAAGAGACCATGATAAAAGCTGAAGGATTTTAATATAATCCTAACTCCCTTGTTATGTAAGCTTAGCTGGCCTTTTGTGGTTTACTGAGTTGACCGGCTGGCCCTCTGAGAACACCGAACACAGACTGGTTTTGTTGGCTAGCGTTTGAAGGGGGGGGAATACAGAACTCTCCTTTCAGTAATACCGATCCTCTTCCTAGTCTCTGTAGGCATGCTCTACTGCCTATCCTCACTGGAGCATTCAACCCTGTCCAGACACTCTCTACCTTCTATAATTCTAATTTCACAGGTGTCTGTGGTCGGCATTGAGCCTGTCACCGCAGATAGAACCCCTCAGGCCCCAGAGATAAATGCAGGTGTCTTTTTTGTCTTCTGCATTTTTAGCCTTCAATGTGCTTTTAACCTACTACAATTTGGCACGTCATCTTGTTGATCCTCAGTCATTATTTATTGTTTTtagtaatgaatgaatgaatgcagACAGTCTGGTTTGAATCAATGTTATGTGTACTGTACACGAGAAAGGGCTTGCTAGAATTTTTAGAACAAGGTGTCTTCCTGTATCAAAATTTGCCTTCATAACGACAGATGGGAAGTTCAAGACATCACATTGTTGGAAATGAAAACCCTTTGCAAGGCAGATGACCATGCAGTATTCTTATGAAGTTAAGCATGTGCAATTAAAGTTGAATTAACAATAAAAACATCATTAAAAACATATCAATCCTGAGTTATCAGGTAAAGGTTCATATCAGAGGATATAAAAAAATAGTGACACTTAAAAGGGACTAAATGAATGTATGCCTTCAATGACCTCCCACCAATACATTTCAGGTGGATAGTTTGCACGTTTGACCGTTCTCTTACTCTTTTCAATGATTAGAAAATACATAGTGGATATCACCATAGAACATAAAGCAATATTTCTGATGAGGTTCTTTGTGATATGATAACATTTGCACTCAAAAGAATAGAACGCAGTAAATGGTATAAACTCATATCAGATATGAGCAATacacagtgttggggagtagtgaactgcATGTAGCtcaactagtaatttaactacattttgcagtagcttggtggtagttgaattACATTCTAATCTTGGTAGTGTGTTCAGTAGTTAATGACTTGTtaccatgtagtggtgtagctaacaACTGGAATTACACATTACTCTTTTTGCAAGATACGGGTAGGAAatcatttcctttctttttcggcATCAGACCTGACTAATTCTCACTTGGAACATTGTGCTTGTGTTTAATAGACAAAATTACACATTCCGTTAACATTTTATCCCAAGatgcaatttgtagtctatgacatttcagatttgcATATGATCATTCATTTTTGAAGTAGTTTGGATGCAgtgaaatacttttttttaatataatatattacaatatATATAGCGTTAACATTATTAGGGTAGCTTTtgtgtagcttaacttcttccagtttgaagtaattggtagcttgggaaactatattttcagagtagcttcatCAACACTGGTAATAGAATATCTTACCTTACCTGAATAACATTAACAACAAACATGTTTCATTGGTATCATTTACTGTCAATGTAGATGTAATCAATAATATTTAAAGCAGAGGAAACAAGGTAGAAACCAACAATTATTGTGACAGCCGTACTGTTtctaattttttattttaaatatgatTTTGTGGTCGTCTGAGGTTTGTTATTTGAATGAAGAAATGCACTTCTAACCTGTCAACAAGTAAAAGACCTGTCAACTGAGATCACCTCATAGTATAATGTGGTATAACAGTAAACCAGAGTAAACATGTTTTAGCTGTGACTCCTGGTCACCTCTAGGTGTAACCTCTCCACATACTCACAGTGAAAAAAACATAACAACCTTCTATATCATTGagaaaaattaaaaataaaataggaCCAAAAGTGCAAGGGCTTTTTCTCATGGAGACCTAATAACATCTGCCTTGTGCCAGACAAAAGTAATTCTTGAACAATGTTTAACAGGAGATCATCTGTTTCTATCTTGGAGTGACTGCAGTCATGTGAAGCCCTGCCTAAGGATGGAATCAACAACCAGACACTCTttgggaggaggaaaggggaaCCAGGATGCATGACTGCTGTctccagagcagagtagagaccCCTCTATCTATCCGAAAGGCCAAGGCTGCCTGAATACTGTCTGCTTGACTGTAGCTCCAGTCTGTTTGGGTAGAAAAACACAGCGTAGAGAGAGATCCTACTGTCCACGTTGGGTGAGTTCCCCCAGCATTATCTCCATAGTCTGTGCAGTGCCAGGGCTGAAAGGGCCAGGCTGGCCAGCAGGGCTGCTGAGGGGGCAGGGTGTGTGGCTGCTGCTGAATCCTCCATCGGGCCACTCCCGCTCCGGTCCGCTCCCACCACCGGGGCCTCGGTGCTGGCAAAGTCAAACTCAGTGACGCAGGCCTCCGTGCAGCCGCTGCCA
>TU2073873
TTTTAATTGCATTAAAAAACTGTAAGGCATTTTTGTTTGTACGGTCTTTATGTTAACTAGATCGTCAACCTTATTGGCTTGAATCAGTTTTCCAATTCTAAGCAACAGATATCATCATGATCTTCTTTTTGTTACAATAGAATGCATTTGACTGTATGATATGTTGATGAATAATGTTTCGGAAACATTTGTTTGACATTAATTTGCTGATCCATAAACATCAATTTTCAAGACAAAATATTGCAAATATATTACCATTAAAAGTGCAATGatacacaaaataaaaaaaacagcatCCTGCAAGATAATTATTCATATTAAAGAATCTTATTTTAAGGACACACTGACAAAGGGACAAAATGTTTTGTTCTCCATAATTTTGCACATCATAATTTTGCCTTACATTCATACAAGATGAACACTAATACTGGTTTATCAAGAGGCAACGAAGCAAGCTCACACAATTTATATGCTGCACTGAGTCCATTAAGAGACCATGATAAAAGCTGAAGGATTTTAATATAATCCTAACTCCCTTGTTATGTAAGCTTAGCTGGCCTTTTGTGGTTTACTGAGTTGACCGGCTGGCCCTCTGAGAACACCGAACACAGACTGGTTTTGTTGGCTAGCGTTTGAAGGGGGGGGAATACAGAACTCTCCTTTCAGTAATACCGATCCTCTTCCTAGTCTCTGTAGGCATGCTCTACTGCCTATCCTCACTGGAGCATTCAACCCTGTCCAGACACTCTCTACCTTCTATAATTCTAATTTCACAGGTGTCTGTGGTCGGCATTGAGCCTGTCACCGCAGATAGAACCCCTCAGGCCCCAGAGATAAATGCAGGTGTCTTTTTTGTCTTCTGCATTTTTAGCCTTCAATGTGCTTTTAACCTACTACAATTTGGCACGTCATCTTGTTGATCCTCAGTCATTATTTATTGTTTTtagtaatgaatgaatgaatgcagACAGTCTGGTTTGAATCAATGTTATGTGTACTGTACACGAGAAAGGGCTTGCTAGAATTTTTAGAACAAGGTGTCTTCCTGTATCAAAATTTGCCTTCATAACGACAGATGGGAAGTTCAAGACATCACATTGTTGGAAATGAAAACCCTTTGCAAGGCAGATGACCATGCAGTATTCTTATGAAGTTAAGCATGTGCAATTAAAGTTGAATTAACAATAAAAACATCATTAAAAACATATCAATCCTGAGTTATCAGGTAAAGGTTCATATCAGAGGATATAAAAAAATAGTGACACTTAAAAGGGACTAAATGAATGTATGCCTTCAATGACCTCCCACCAATACATTTCAGGTGGATAGTTTGCACGTTTGACCGTTCTCTTACTCTTTTCAATGATTAGAAAATACATAGTGGATATCACCATAGAACATAAAGCAATATTTCTGATGAGGTTCTTTGTGATATGATAACATTTGCACTCAAAAGAATAGAACGCAGTAAATGGTATAAACTCATATCAGATATGAGCAATacacagtgttggggagtagtgaactgcATGTAGCtcaactagtaatttaactacattttgcagtagcttggtggtagttgaattACATTCTAATCTTGGTAGTGTGTTCAGTAGTTAATGACTTGTtaccatgtagtggtgtagctaacaACTGGAATTACACATTACTCTTTTTGCAAGATACGGGTAGGAAatcatttcctttctttttcggcATCAGACCTGACTAATTCTCACTTGGAACATTGTGCTTGTGTTTAATAGACAAAATTACACATTCCGTTAACATTTTATCCCAAGatgcaatttgtagtctatgacatttcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2073872 False 2631 lncRNA 0.40 1 43036738 43039368
TU2073873 True 1831 lncRNA 0.36 1 43037886 43039716

Neighbor

gene id symbol gene type direction distance location
LOC110501899 LOC106582439 coding downstream 213126 42801020 ~ 42823612 (-)
LOC110501898 LOC106582438 coding downstream 239246 42770253 ~ 42797492 (-)
LOC110501897 LOC106582436 coding downstream 288161 42740619 ~ 42748577 (-)
LOC110502155 psd12 coding downstream 430970 42603998 ~ 42605768 (-)
LOC110501896 LOC106582434 coding downstream 433289 42592218 ~ 42603449 (-)
LOC110501902 LOC106582441 coding upstream 10688 43050404 ~ 43056474 (-)
LOC110502158 LOC100137092 coding upstream 19833 43059549 ~ 43067135 (-)
LOC110501903 LOC106582442 coding upstream 59616 43099332 ~ 43101649 (-)
LOC110502159 NA coding upstream 114071 43153787 ~ 43159661 (-)
LOC118943590 NA coding upstream 453569 43493285 ~ 43498392 (-)
G1812803 NA non-coding downstream 1937 43034485 ~ 43034801 (-)
G1812802 NA non-coding downstream 3323 43032988 ~ 43033415 (-)
G1812786 NA non-coding downstream 17766 43018656 ~ 43018972 (-)
G1812783 NA non-coding downstream 24546 43011980 ~ 43012192 (-)
G1812782 NA non-coding downstream 25319 43011185 ~ 43011419 (-)
G1812843 NA non-coding upstream 28881 43068597 ~ 43068810 (-)
G1812869 NA non-coding upstream 51027 43090743 ~ 43091294 (-)
G1812886 NA non-coding upstream 58884 43098600 ~ 43098868 (-)
G1812894 NA non-coding upstream 68272 43107988 ~ 43108296 (-)
G1812901 NA non-coding upstream 72384 43112100 ~ 43112330 (-)
G1812404 NA other downstream 358978 42677257 ~ 42677760 (-)
G1812079 LOC106582433 other downstream 647465 42386822 ~ 42389273 (-)
G1811042 NA other downstream 1431507 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 1571091 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 1470691 44473683 ~ 44553607 (-)
G1814480 NA other upstream 1633731 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2799034 45838750 ~ 45840982 (-)
G1816841 NA other upstream 4185835 47225551 ~ 47226646 (-)
G1816929 NA other upstream 4361406 47400985 ~ 47402047 (-)

Expression


Co-expression Network